Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28135 | 5' | -61.9 | NC_005887.1 | + | 1486 | 0.69 | 0.200398 |
Target: 5'- aCGGCgUGCGGcGCUcGCGCGGCGcGGCc -3' miRNA: 3'- cGUCG-GCGUCaCGA-CGCGCCGC-UCGc -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 7477 | 0.69 | 0.195203 |
Target: 5'- gGCGGCgGCgGGUGCgaccgugGCGaucgucguCGGCGAGCu -3' miRNA: 3'- -CGUCGgCG-UCACGa------CGC--------GCCGCUCGc -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 33148 | 0.69 | 0.195203 |
Target: 5'- aGCAGCCGaCcGUGC--CGCGGCGGuGCu -3' miRNA: 3'- -CGUCGGC-GuCACGacGCGCCGCU-CGc -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 18999 | 0.69 | 0.185167 |
Target: 5'- gGCcGCCGaCGGccGCUGCGagauuCGGUGAGCGc -3' miRNA: 3'- -CGuCGGC-GUCa-CGACGC-----GCCGCUCGC- -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 3469 | 0.69 | 0.185167 |
Target: 5'- cGCccuGCCaGCGGUaGC-GCGCGGCGAacaGCGu -3' miRNA: 3'- -CGu--CGG-CGUCA-CGaCGCGCCGCU---CGC- -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 24105 | 0.69 | 0.185167 |
Target: 5'- uGUGGCCcuugGCcGUGCUGCGCGuGuCGuGCGg -3' miRNA: 3'- -CGUCGG----CGuCACGACGCGC-C-GCuCGC- -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 26495 | 0.69 | 0.180322 |
Target: 5'- cGCGGCUGCAGcGCgcguucccGCGCGGCcgccAGCu -3' miRNA: 3'- -CGUCGGCGUCaCGa-------CGCGCCGc---UCGc -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 11618 | 0.69 | 0.175589 |
Target: 5'- cGCGaccGCCGCGc-GCUGCGCGcCGAGCu -3' miRNA: 3'- -CGU---CGGCGUcaCGACGCGCcGCUCGc -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 21055 | 0.7 | 0.170967 |
Target: 5'- aCAGCUGaauaGGUGCgaGCGUGGCGccaAGCGc -3' miRNA: 3'- cGUCGGCg---UCACGa-CGCGCCGC---UCGC- -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 2570 | 0.7 | 0.170967 |
Target: 5'- --cGCCGCAugGCcGUgaGCGGCGAGCGg -3' miRNA: 3'- cguCGGCGUcaCGaCG--CGCCGCUCGC- -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 30763 | 0.7 | 0.166454 |
Target: 5'- uCAGCuCGaCcGUGC-GCGCGGCGAGUu -3' miRNA: 3'- cGUCG-GC-GuCACGaCGCGCCGCUCGc -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 312 | 0.7 | 0.163798 |
Target: 5'- -aGGCCGCGGUGC-GCGCguacaccgaggaaguGcGCGAGCc -3' miRNA: 3'- cgUCGGCGUCACGaCGCG---------------C-CGCUCGc -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 14704 | 0.7 | 0.162049 |
Target: 5'- cGCGGCgGgCGG-GCcggGCGCGGCGAucGCGc -3' miRNA: 3'- -CGUCGgC-GUCaCGa--CGCGCCGCU--CGC- -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 34703 | 0.7 | 0.162049 |
Target: 5'- gGCGGCCGUcGUcGCgcuugcggUGCGCGGCGAuGUa -3' miRNA: 3'- -CGUCGGCGuCA-CG--------ACGCGCCGCU-CGc -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 29738 | 0.7 | 0.161614 |
Target: 5'- cGC-GCCGCGcGUGCacggucuUGCcCGGCGAGCu -3' miRNA: 3'- -CGuCGGCGU-CACG-------ACGcGCCGCUCGc -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 15827 | 0.7 | 0.157748 |
Target: 5'- cGCAGgUGCAGcGCuUGCGCGGC--GCGa -3' miRNA: 3'- -CGUCgGCGUCaCG-ACGCGCCGcuCGC- -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 35393 | 0.7 | 0.157748 |
Target: 5'- cCGGCCGCcGcgGC-GCGCGGCagugGAGCGa -3' miRNA: 3'- cGUCGGCGuCa-CGaCGCGCCG----CUCGC- -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 15974 | 0.7 | 0.149456 |
Target: 5'- cGCGGaaCGCAGgucggccaGCUGCGCGuCGAGCGc -3' miRNA: 3'- -CGUCg-GCGUCa-------CGACGCGCcGCUCGC- -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 14821 | 0.71 | 0.14546 |
Target: 5'- gGCGGCCGCGacGCUGa-UGGCGGGCa -3' miRNA: 3'- -CGUCGGCGUcaCGACgcGCCGCUCGc -5' |
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28135 | 5' | -61.9 | NC_005887.1 | + | 5562 | 0.71 | 0.14546 |
Target: 5'- uGCGGCCGgugcugcggcCGGUGCUGCGCcaucGGCcuGCGu -3' miRNA: 3'- -CGUCGGC----------GUCACGACGCG----CCGcuCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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