miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 5' -61.9 NC_005887.1 + 15258 1.09 0.000144
Target:  5'- gGCAGCCGCAGUGCUGCGCGGCGAGCGu -3'
miRNA:   3'- -CGUCGGCGUCACGACGCGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 42054 0.77 0.050167
Target:  5'- -gGGCCGCAggccGUGCUGCuGauaGGCGAGCGc -3'
miRNA:   3'- cgUCGGCGU----CACGACG-Cg--CCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 17376 0.75 0.0643
Target:  5'- uGCAGCaCGCGGUGCgccgaaccggcguuUGCGCGcGCG-GCGc -3'
miRNA:   3'- -CGUCG-GCGUCACG--------------ACGCGC-CGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 25491 0.75 0.06485
Target:  5'- cGCAGCgGCGGcucgGaCgaugGCGCGGCGGGUGg -3'
miRNA:   3'- -CGUCGgCGUCa---C-Ga---CGCGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 632 0.75 0.066718
Target:  5'- -aAGCCGCGaUGaaagcGCGCGGCGAGCGc -3'
miRNA:   3'- cgUCGGCGUcACga---CGCGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 11388 0.75 0.072637
Target:  5'- cGCAGCCGgAGcGCUG-GCGGCcGGCGc -3'
miRNA:   3'- -CGUCGGCgUCaCGACgCGCCGcUCGC- -5'
28135 5' -61.9 NC_005887.1 + 32442 0.74 0.083637
Target:  5'- gGCGGCgaucagguugCGCAGccaCUGCGCGGCGuGCGg -3'
miRNA:   3'- -CGUCG----------GCGUCac-GACGCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 15048 0.73 0.090983
Target:  5'- uGCGGCCugcGCGGc-CUGCGCGGCGuaGGCGu -3'
miRNA:   3'- -CGUCGG---CGUCacGACGCGCCGC--UCGC- -5'
28135 5' -61.9 NC_005887.1 + 3680 0.73 0.093565
Target:  5'- aCGGCCGaAGcGCUGCGCGGCcuGGCGc -3'
miRNA:   3'- cGUCGGCgUCaCGACGCGCCGc-UCGC- -5'
28135 5' -61.9 NC_005887.1 + 10427 0.73 0.101733
Target:  5'- aCGGUCGCGGUGCUGacCGaCGGCGcAGUGc -3'
miRNA:   3'- cGUCGGCGUCACGAC--GC-GCCGC-UCGC- -5'
28135 5' -61.9 NC_005887.1 + 23369 0.72 0.110569
Target:  5'- -gGGCCGCAGUGCgGCGUuguucuucgGcGCGGGCu -3'
miRNA:   3'- cgUCGGCGUCACGaCGCG---------C-CGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 41930 0.72 0.110569
Target:  5'- aGCGGCuCGCAGcugaGCUGCcCGGCGuGCu -3'
miRNA:   3'- -CGUCG-GCGUCa---CGACGcGCCGCuCGc -5'
28135 5' -61.9 NC_005887.1 + 486 0.72 0.113671
Target:  5'- cGCAGCaacaGCGG-GCgGCGCGGCGcgucuucgcGGCGc -3'
miRNA:   3'- -CGUCGg---CGUCaCGaCGCGCCGC---------UCGC- -5'
28135 5' -61.9 NC_005887.1 + 2999 0.72 0.120121
Target:  5'- cGguGCCGCGGcGCuUGCGCagcuuGGCG-GCGg -3'
miRNA:   3'- -CguCGGCGUCaCG-ACGCG-----CCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 40006 0.72 0.120121
Target:  5'- uGCAggacGUCGCGGUGCgcaucaugGCGCGGCucgaGGCGg -3'
miRNA:   3'- -CGU----CGGCGUCACGa-------CGCGCCGc---UCGC- -5'
28135 5' -61.9 NC_005887.1 + 37061 0.72 0.120121
Target:  5'- aCGGCCuGCGcGUGCUcGC-CGGCGAGCu -3'
miRNA:   3'- cGUCGG-CGU-CACGA-CGcGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 21389 0.72 0.120121
Target:  5'- cCGGCCGa--UGCggucgGCGCGGUGGGCGu -3'
miRNA:   3'- cGUCGGCgucACGa----CGCGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 8177 0.72 0.120121
Target:  5'- aCAGCgGCGccucgGCgaGCGCGGCGAGCu -3'
miRNA:   3'- cGUCGgCGUca---CGa-CGCGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 15934 0.72 0.123472
Target:  5'- aGCuGCUGguGcgccUGCUGCGCG-CGGGCGu -3'
miRNA:   3'- -CGuCGGCguC----ACGACGCGCcGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 27772 0.71 0.130435
Target:  5'- --cGCCGUcgAGUGCUaCGCGGCGAGg- -3'
miRNA:   3'- cguCGGCG--UCACGAcGCGCCGCUCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.