miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 5' -61.9 NC_005887.1 + 41597 0.67 0.246405
Target:  5'- aGCGGCgGCccaGGUGCggcggccgGCGCGGCccGUGa -3'
miRNA:   3'- -CGUCGgCG---UCACGa-------CGCGCCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 14704 0.7 0.162049
Target:  5'- cGCGGCgGgCGG-GCcggGCGCGGCGAucGCGc -3'
miRNA:   3'- -CGUCGgC-GUCaCGa--CGCGCCGCU--CGC- -5'
28135 5' -61.9 NC_005887.1 + 312 0.7 0.163798
Target:  5'- -aGGCCGCGGUGC-GCGCguacaccgaggaaguGcGCGAGCc -3'
miRNA:   3'- cgUCGGCGUCACGaCGCG---------------C-CGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 30763 0.7 0.166454
Target:  5'- uCAGCuCGaCcGUGC-GCGCGGCGAGUu -3'
miRNA:   3'- cGUCG-GC-GuCACGaCGCGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 2570 0.7 0.170967
Target:  5'- --cGCCGCAugGCcGUgaGCGGCGAGCGg -3'
miRNA:   3'- cguCGGCGUcaCGaCG--CGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 24105 0.69 0.185167
Target:  5'- uGUGGCCcuugGCcGUGCUGCGCGuGuCGuGCGg -3'
miRNA:   3'- -CGUCGG----CGuCACGACGCGC-C-GCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 33148 0.69 0.195203
Target:  5'- aGCAGCCGaCcGUGC--CGCGGCGGuGCu -3'
miRNA:   3'- -CGUCGGC-GuCACGacGCGCCGCU-CGc -5'
28135 5' -61.9 NC_005887.1 + 1486 0.69 0.200398
Target:  5'- aCGGCgUGCGGcGCUcGCGCGGCGcGGCc -3'
miRNA:   3'- cGUCG-GCGUCaCGA-CGCGCCGC-UCGc -5'
28135 5' -61.9 NC_005887.1 + 17191 0.68 0.222391
Target:  5'- cGCGGCCGCAcgcggcaaUGUUGCGCcGCGcaAGCa -3'
miRNA:   3'- -CGUCGGCGUc-------ACGACGCGcCGC--UCGc -5'
28135 5' -61.9 NC_005887.1 + 34703 0.7 0.162049
Target:  5'- gGCGGCCGUcGUcGCgcuugcggUGCGCGGCGAuGUa -3'
miRNA:   3'- -CGUCGGCGuCA-CG--------ACGCGCCGCU-CGc -5'
28135 5' -61.9 NC_005887.1 + 29738 0.7 0.161614
Target:  5'- cGC-GCCGCGcGUGCacggucuUGCcCGGCGAGCu -3'
miRNA:   3'- -CGuCGGCGU-CACG-------ACGcGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 15827 0.7 0.157748
Target:  5'- cGCAGgUGCAGcGCuUGCGCGGC--GCGa -3'
miRNA:   3'- -CGUCgGCGUCaCG-ACGCGCCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 25491 0.75 0.06485
Target:  5'- cGCAGCgGCGGcucgGaCgaugGCGCGGCGGGUGg -3'
miRNA:   3'- -CGUCGgCGUCa---C-Ga---CGCGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 632 0.75 0.066718
Target:  5'- -aAGCCGCGaUGaaagcGCGCGGCGAGCGc -3'
miRNA:   3'- cgUCGGCGUcACga---CGCGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 11388 0.75 0.072637
Target:  5'- cGCAGCCGgAGcGCUG-GCGGCcGGCGc -3'
miRNA:   3'- -CGUCGGCgUCaCGACgCGCCGcUCGC- -5'
28135 5' -61.9 NC_005887.1 + 32442 0.74 0.083637
Target:  5'- gGCGGCgaucagguugCGCAGccaCUGCGCGGCGuGCGg -3'
miRNA:   3'- -CGUCG----------GCGUCac-GACGCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 10427 0.73 0.101733
Target:  5'- aCGGUCGCGGUGCUGacCGaCGGCGcAGUGc -3'
miRNA:   3'- cGUCGGCGUCACGAC--GC-GCCGC-UCGC- -5'
28135 5' -61.9 NC_005887.1 + 41930 0.72 0.110569
Target:  5'- aGCGGCuCGCAGcugaGCUGCcCGGCGuGCu -3'
miRNA:   3'- -CGUCG-GCGUCa---CGACGcGCCGCuCGc -5'
28135 5' -61.9 NC_005887.1 + 40006 0.72 0.120121
Target:  5'- uGCAggacGUCGCGGUGCgcaucaugGCGCGGCucgaGGCGg -3'
miRNA:   3'- -CGU----CGGCGUCACGa-------CGCGCCGc---UCGC- -5'
28135 5' -61.9 NC_005887.1 + 14821 0.71 0.14546
Target:  5'- gGCGGCCGCGacGCUGa-UGGCGGGCa -3'
miRNA:   3'- -CGUCGGCGUcaCGACgcGCCGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.