miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 5' -61.9 NC_005887.1 + 30866 0.66 0.323508
Target:  5'- -aGGCCGCGGUGC-GCGCcauugaucGCGcGCa -3'
miRNA:   3'- cgUCGGCGUCACGaCGCGc-------CGCuCGc -5'
28135 5' -61.9 NC_005887.1 + 4684 0.68 0.228201
Target:  5'- gGCGGCCacCGGcGC--CGCGGCGAGCa -3'
miRNA:   3'- -CGUCGGc-GUCaCGacGCGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 34348 0.68 0.222391
Target:  5'- uCAGCCGCAcGgcgacgGCaUGCGCaagccGCGAGCGc -3'
miRNA:   3'- cGUCGGCGU-Ca-----CG-ACGCGc----CGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 42054 0.77 0.050167
Target:  5'- -gGGCCGCAggccGUGCUGCuGauaGGCGAGCGc -3'
miRNA:   3'- cgUCGGCGU----CACGACG-Cg--CCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 5085 0.66 0.315809
Target:  5'- -uGGCUuCGGU-CUGCGCcucGGCGGGCGu -3'
miRNA:   3'- cgUCGGcGUCAcGACGCG---CCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 32824 0.66 0.30825
Target:  5'- cCGGCUGCAuGgcgcGCgccgGCGCGcacGCGAGCGc -3'
miRNA:   3'- cGUCGGCGU-Ca---CGa---CGCGC---CGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 13715 0.66 0.293547
Target:  5'- cGCGuucuGCaCGuCGGUGCUGCuCGGCuGAGUGc -3'
miRNA:   3'- -CGU----CG-GC-GUCACGACGcGCCG-CUCGC- -5'
28135 5' -61.9 NC_005887.1 + 8629 0.66 0.293547
Target:  5'- --uGCUGCGGUGCUGCcuuCGGCauGCGc -3'
miRNA:   3'- cguCGGCGUCACGACGc--GCCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 15011 0.67 0.279397
Target:  5'- uGCGGCgCGUcGUacgGCagcGCGCGGCGuGCGu -3'
miRNA:   3'- -CGUCG-GCGuCA---CGa--CGCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 14949 0.67 0.246405
Target:  5'- aGCAGCuggCGCAuucUGCcGCGCGGUGcGCGc -3'
miRNA:   3'- -CGUCG---GCGUc--ACGaCGCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 625 0.67 0.279397
Target:  5'- -uGGCCgGCGGUcuucGCgcuguauccgGCGCGGCGcGCGg -3'
miRNA:   3'- cgUCGG-CGUCA----CGa---------CGCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 31856 0.66 0.286403
Target:  5'- uGCGGCgGCAGaccacugGCU-CGCagGGUGGGCGa -3'
miRNA:   3'- -CGUCGgCGUCa------CGAcGCG--CCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 3781 0.66 0.315809
Target:  5'- cGCGGaUCGCGGUcgGC-GCGCGGCucgacGGCGu -3'
miRNA:   3'- -CGUC-GGCGUCA--CGaCGCGCCGc----UCGC- -5'
28135 5' -61.9 NC_005887.1 + 21578 0.67 0.259198
Target:  5'- gGCAGCCgGCGucGUUGCGCcgauugccggcGGCGAuGCGa -3'
miRNA:   3'- -CGUCGG-CGUcaCGACGCG-----------CCGCU-CGC- -5'
28135 5' -61.9 NC_005887.1 + 14083 0.66 0.315809
Target:  5'- gGCGGCgCGCcGgcgGUUGCGgaGGCGcGCGg -3'
miRNA:   3'- -CGUCG-GCGuCa--CGACGCg-CCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 15679 0.66 0.286403
Target:  5'- cCGGCCGCc-UGCUGCGCGacgccCGuGCGc -3'
miRNA:   3'- cGUCGGCGucACGACGCGCc----GCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 2605 0.67 0.252735
Target:  5'- aGUAGCCGCccgacAGcGCcuUGCGCaGCGuGCGg -3'
miRNA:   3'- -CGUCGGCG-----UCaCG--ACGCGcCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 16017 0.68 0.228201
Target:  5'- aCAGCgGC-GUGCggcGCGUGGCcGGCGc -3'
miRNA:   3'- cGUCGgCGuCACGa--CGCGCCGcUCGC- -5'
28135 5' -61.9 NC_005887.1 + 40750 0.66 0.315809
Target:  5'- cCAGCCGUgcgcgcgcgccaGGUGCaggaugGUGCGGCcGGUGa -3'
miRNA:   3'- cGUCGGCG------------UCACGa-----CGCGCCGcUCGC- -5'
28135 5' -61.9 NC_005887.1 + 36151 0.66 0.294269
Target:  5'- -uGGCCGCcuacGUGCagcuguacaucgacgGCGUGcGCGAGCGc -3'
miRNA:   3'- cgUCGGCGu---CACGa--------------CGCGC-CGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.