Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28138 | 5' | -55.9 | NC_005887.1 | + | 16845 | 0.69 | 0.438905 |
Target: 5'- cGCGAcaucauccgCGAGGUGuACCgcgGCGCGGAc -3' miRNA: 3'- uCGCUa--------GCUCCGCuUGGa--CGCGCUUc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 18034 | 0.66 | 0.575778 |
Target: 5'- uGCGGcCGAugccGGCGAGCCcGCGCa--- -3' miRNA: 3'- uCGCUaGCU----CCGCUUGGaCGCGcuuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 18297 | 0.68 | 0.45884 |
Target: 5'- cGGCGuggcCGAGGCGAucACCUucGUGCGcAGa -3' miRNA: 3'- -UCGCua--GCUCCGCU--UGGA--CGCGCuUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 18447 | 0.67 | 0.56476 |
Target: 5'- cGCGAUCucgacgcAGGCGAagaACCUGCucGCGGGc -3' miRNA: 3'- uCGCUAGc------UCCGCU---UGGACG--CGCUUc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 24748 | 0.69 | 0.448812 |
Target: 5'- aGGCGGUCGAGGau-GCCgGcCGCGGc- -3' miRNA: 3'- -UCGCUAGCUCCgcuUGGaC-GCGCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 28422 | 0.66 | 0.609086 |
Target: 5'- gAGCGcgCGcAGGCGcuCgUGCucGCGAAGc -3' miRNA: 3'- -UCGCuaGC-UCCGCuuGgACG--CGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 29772 | 0.66 | 0.586845 |
Target: 5'- uGCGAcgCGAcGGCGAguGgCUGCGCGu-- -3' miRNA: 3'- uCGCUa-GCU-CCGCU--UgGACGCGCuuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 30683 | 0.72 | 0.299191 |
Target: 5'- gGGCaGAUCGAccucguacucGGCGAGCaggUGCGCGAGc -3' miRNA: 3'- -UCG-CUAGCU----------CCGCUUGg--ACGCGCUUc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 32293 | 0.71 | 0.314616 |
Target: 5'- gGGCGAUCGucGGGCcAGCCgGCGCGc-- -3' miRNA: 3'- -UCGCUAGC--UCCGcUUGGaCGCGCuuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 32450 | 0.66 | 0.59795 |
Target: 5'- gAGU-AUCGAGGaUGucaaccugauGACCUGCGCGGAu -3' miRNA: 3'- -UCGcUAGCUCC-GC----------UUGGACGCGCUUc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 33717 | 0.66 | 0.596839 |
Target: 5'- cGGCGGUCGAucugcucgaucgcGGCGAggAUCaGCGCGccGg -3' miRNA: 3'- -UCGCUAGCU-------------CCGCU--UGGaCGCGCuuC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 33840 | 0.67 | 0.56476 |
Target: 5'- cGGCGAUCGAacgcaugcagGGCGuacgAGCCUGCgGCa--- -3' miRNA: 3'- -UCGCUAGCU----------CCGC----UUGGACG-CGcuuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 34378 | 0.67 | 0.51066 |
Target: 5'- cGCGuAUCaGAGuGCG-GCCggGCGCGAGGc -3' miRNA: 3'- uCGC-UAG-CUC-CGCuUGGa-CGCGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 34544 | 0.76 | 0.157214 |
Target: 5'- gGGCGAcagcuucUCGGGcGCGAGCC-GCGCGAAc -3' miRNA: 3'- -UCGCU-------AGCUC-CGCUUGGaCGCGCUUc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 34929 | 0.66 | 0.620242 |
Target: 5'- aGGCGAUCGAGGCcgcGAUCaagucgguUGcCGuCGAAGg -3' miRNA: 3'- -UCGCUAGCUCCGc--UUGG--------AC-GC-GCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 35206 | 0.7 | 0.382226 |
Target: 5'- gGGCGAUuCGuuGCGcagcagcuugucGGCCUGCGUGggGc -3' miRNA: 3'- -UCGCUA-GCucCGC------------UUGGACGCGCuuC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 35480 | 0.66 | 0.575778 |
Target: 5'- -cUGAUCGAcucgugGGCGAagGCCgUGCGCGGGc -3' miRNA: 3'- ucGCUAGCU------CCGCU--UGG-ACGCGCUUc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 36033 | 0.69 | 0.41756 |
Target: 5'- gGGCGAacgCGGGGCGAAgggcacgagcgaCUGCGUGAu- -3' miRNA: 3'- -UCGCUa--GCUCCGCUUg-----------GACGCGCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 36113 | 0.66 | 0.620242 |
Target: 5'- gAGCGcGUCGAGGCcuugcGCCUcgccgGCGcCGAGGu -3' miRNA: 3'- -UCGC-UAGCUCCGcu---UGGA-----CGC-GCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 37439 | 0.69 | 0.429125 |
Target: 5'- gAGUGGagCGcGGCGcuuGCCUGCGCGGu- -3' miRNA: 3'- -UCGCUa-GCuCCGCu--UGGACGCGCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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