miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 5' -55.9 NC_005887.1 + 1197 0.67 0.542898
Target:  5'- uGGCGAucuaaacaaaacUCGGaucaccuuaucuGGCGGGCgCUGCGCGGc- -3'
miRNA:   3'- -UCGCU------------AGCU------------CCGCUUG-GACGCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 1742 0.7 0.355773
Target:  5'- cGUGcUCGGGGCGAuCgaGCGCGAu- -3'
miRNA:   3'- uCGCuAGCUCCGCUuGgaCGCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 2413 0.67 0.553797
Target:  5'- uGGCu-UCGAGGCGAaGCCcGCGcCGAc- -3'
miRNA:   3'- -UCGcuAGCUCCGCU-UGGaCGC-GCUuc -5'
28138 5' -55.9 NC_005887.1 + 2501 0.66 0.609086
Target:  5'- uAGCGcgCGAGGUGucauUCgucgGCGCGGGc -3'
miRNA:   3'- -UCGCuaGCUCCGCuu--GGa---CGCGCUUc -5'
28138 5' -55.9 NC_005887.1 + 2632 0.66 0.59795
Target:  5'- cGUGGcCGAGGCGAgucaguACCUGCuggugggcgcggGCGAGc -3'
miRNA:   3'- uCGCUaGCUCCGCU------UGGACG------------CGCUUc -5'
28138 5' -55.9 NC_005887.1 + 4888 0.67 0.532071
Target:  5'- cGCGA-CGAuGGUcgccgaGGGCCgGCGCGAGGu -3'
miRNA:   3'- uCGCUaGCU-CCG------CUUGGaCGCGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 5817 0.7 0.373264
Target:  5'- cGGCGAUCGAGucggcGCGggUCgcgaaGgGCGAAGc -3'
miRNA:   3'- -UCGCUAGCUC-----CGCuuGGa----CgCGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 7457 0.7 0.382226
Target:  5'- uGGCGAUCGucgucGGCGAGCUgaaCGCGGc- -3'
miRNA:   3'- -UCGCUAGCu----CCGCUUGGac-GCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 8165 0.69 0.448812
Target:  5'- cGGCGAgCGcGGCGAG-CUGCGCGc-- -3'
miRNA:   3'- -UCGCUaGCuCCGCUUgGACGCGCuuc -5'
28138 5' -55.9 NC_005887.1 + 8458 0.67 0.553797
Target:  5'- cGCGAUCGAgcgcccGGCGcAACCgcucgGCGaCGAc- -3'
miRNA:   3'- uCGCUAGCU------CCGC-UUGGa----CGC-GCUuc -5'
28138 5' -55.9 NC_005887.1 + 12793 0.68 0.45884
Target:  5'- cGCGAUCGAGcGCauucuGCugCUGCGCGAc- -3'
miRNA:   3'- uCGCUAGCUC-CGcu---UG--GACGCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 14550 0.69 0.448812
Target:  5'- cGCGG-CG-GGCacGAUCUGCGCGAGGc -3'
miRNA:   3'- uCGCUaGCuCCGc-UUGGACGCGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 14620 0.66 0.631409
Target:  5'- cGGCGccGUCGAgGGCGcgcucacggcAGCCgGCGCGGu- -3'
miRNA:   3'- -UCGC--UAGCU-CCGC----------UUGGaCGCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 14704 0.71 0.314616
Target:  5'- cGCGG-CG-GGCGGGCCggGCGCGgcGa -3'
miRNA:   3'- uCGCUaGCuCCGCUUGGa-CGCGCuuC- -5'
28138 5' -55.9 NC_005887.1 + 14736 0.66 0.631409
Target:  5'- aGGCGAcgaUCGAGaaaGCGAuUCUGCGCa--- -3'
miRNA:   3'- -UCGCU---AGCUC---CGCUuGGACGCGcuuc -5'
28138 5' -55.9 NC_005887.1 + 15075 0.69 0.429125
Target:  5'- cGCGAgcaucagcUCG-GGCGGcacgccugcgGCCUGCGCGGc- -3'
miRNA:   3'- uCGCU--------AGCuCCGCU----------UGGACGCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 15849 0.72 0.277162
Target:  5'- cGCGAUCGAGG-GAaacGCCcGCGCGcAGc -3'
miRNA:   3'- uCGCUAGCUCCgCU---UGGaCGCGCuUC- -5'
28138 5' -55.9 NC_005887.1 + 16064 0.67 0.532071
Target:  5'- cGGC--UCGcGGCGggUCUGCGCGc-- -3'
miRNA:   3'- -UCGcuAGCuCCGCuuGGACGCGCuuc -5'
28138 5' -55.9 NC_005887.1 + 16174 1.09 0.000605
Target:  5'- gAGCGAUCGAGGCGAACCUGCGCGAAGa -3'
miRNA:   3'- -UCGCUAGCUCCGCUUGGACGCGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 16522 0.67 0.51066
Target:  5'- cGCGGUCGAGcGCauGCCcGCGCGc-- -3'
miRNA:   3'- uCGCUAGCUC-CGcuUGGaCGCGCuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.