miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 5' -55.9 NC_005887.1 + 16174 1.09 0.000605
Target:  5'- gAGCGAUCGAGGCGAACCUGCGCGAAGa -3'
miRNA:   3'- -UCGCUAGCUCCGCUUGGACGCGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 34544 0.76 0.157214
Target:  5'- gGGCGAcagcuucUCGGGcGCGAGCC-GCGCGAAc -3'
miRNA:   3'- -UCGCU-------AGCUC-CGCUUGGaCGCGCUUc -5'
28138 5' -55.9 NC_005887.1 + 40746 0.73 0.243353
Target:  5'- cGCG-UCGAGGCGAucGCCguugGCGCGc-- -3'
miRNA:   3'- uCGCuAGCUCCGCU--UGGa---CGCGCuuc -5'
28138 5' -55.9 NC_005887.1 + 15849 0.72 0.277162
Target:  5'- cGCGAUCGAGG-GAaacGCCcGCGCGcAGc -3'
miRNA:   3'- uCGCUAGCUCCgCU---UGGaCGCGCuUC- -5'
28138 5' -55.9 NC_005887.1 + 30683 0.72 0.299191
Target:  5'- gGGCaGAUCGAccucguacucGGCGAGCaggUGCGCGAGc -3'
miRNA:   3'- -UCG-CUAGCU----------CCGCUUGg--ACGCGCUUc -5'
28138 5' -55.9 NC_005887.1 + 14704 0.71 0.314616
Target:  5'- cGCGG-CG-GGCGGGCCggGCGCGgcGa -3'
miRNA:   3'- uCGCUaGCuCCGCUUGGa-CGCGCuuC- -5'
28138 5' -55.9 NC_005887.1 + 32293 0.71 0.314616
Target:  5'- gGGCGAUCGucGGGCcAGCCgGCGCGc-- -3'
miRNA:   3'- -UCGCUAGC--UCCGcUUGGaCGCGCuuc -5'
28138 5' -55.9 NC_005887.1 + 1742 0.7 0.355773
Target:  5'- cGUGcUCGGGGCGAuCgaGCGCGAu- -3'
miRNA:   3'- uCGCuAGCUCCGCUuGgaCGCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 5817 0.7 0.373264
Target:  5'- cGGCGAUCGAGucggcGCGggUCgcgaaGgGCGAAGc -3'
miRNA:   3'- -UCGCUAGCUC-----CGCuuGGa----CgCGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 35206 0.7 0.382226
Target:  5'- gGGCGAUuCGuuGCGcagcagcuugucGGCCUGCGUGggGc -3'
miRNA:   3'- -UCGCUA-GCucCGC------------UUGGACGCGCuuC- -5'
28138 5' -55.9 NC_005887.1 + 7457 0.7 0.382226
Target:  5'- uGGCGAUCGucgucGGCGAGCUgaaCGCGGc- -3'
miRNA:   3'- -UCGCUAGCu----CCGCUUGGac-GCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 38374 0.69 0.400575
Target:  5'- cGGUGAUCGAcaacGGCGAcggcacccugACCguugcGUGCGAAGu -3'
miRNA:   3'- -UCGCUAGCU----CCGCU----------UGGa----CGCGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 36033 0.69 0.41756
Target:  5'- gGGCGAacgCGGGGCGAAgggcacgagcgaCUGCGUGAu- -3'
miRNA:   3'- -UCGCUa--GCUCCGCUUg-----------GACGCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 15075 0.69 0.429125
Target:  5'- cGCGAgcaucagcUCG-GGCGGcacgccugcgGCCUGCGCGGc- -3'
miRNA:   3'- uCGCU--------AGCuCCGCU----------UGGACGCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 39018 0.69 0.429125
Target:  5'- cGCGcaGUCGAcGGCG-GCUUGCuGCGGAGu -3'
miRNA:   3'- uCGC--UAGCU-CCGCuUGGACG-CGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 37439 0.69 0.429125
Target:  5'- gAGUGGagCGcGGCGcuuGCCUGCGCGGu- -3'
miRNA:   3'- -UCGCUa-GCuCCGCu--UGGACGCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 16845 0.69 0.438905
Target:  5'- cGCGAcaucauccgCGAGGUGuACCgcgGCGCGGAc -3'
miRNA:   3'- uCGCUa--------GCUCCGCuUGGa--CGCGCUUc -5'
28138 5' -55.9 NC_005887.1 + 24748 0.69 0.448812
Target:  5'- aGGCGGUCGAGGau-GCCgGcCGCGGc- -3'
miRNA:   3'- -UCGCUAGCUCCgcuUGGaC-GCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 14550 0.69 0.448812
Target:  5'- cGCGG-CG-GGCacGAUCUGCGCGAGGc -3'
miRNA:   3'- uCGCUaGCuCCGc-UUGGACGCGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 8165 0.69 0.448812
Target:  5'- cGGCGAgCGcGGCGAG-CUGCGCGc-- -3'
miRNA:   3'- -UCGCUaGCuCCGCUUgGACGCGCuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.