Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28138 | 5' | -55.9 | NC_005887.1 | + | 33717 | 0.66 | 0.596839 |
Target: 5'- cGGCGGUCGAucugcucgaucgcGGCGAggAUCaGCGCGccGg -3' miRNA: 3'- -UCGCUAGCU-------------CCGCU--UGGaCGCGCuuC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 34378 | 0.67 | 0.51066 |
Target: 5'- cGCGuAUCaGAGuGCG-GCCggGCGCGAGGc -3' miRNA: 3'- uCGC-UAG-CUC-CGCuUGGa-CGCGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 4888 | 0.67 | 0.532071 |
Target: 5'- cGCGA-CGAuGGUcgccgaGGGCCgGCGCGAGGu -3' miRNA: 3'- uCGCUaGCU-CCG------CUUGGaCGCGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 41674 | 0.67 | 0.532071 |
Target: 5'- uGGCGAgccggaCGAagguaGCGAG-CUGCGCGAGGg -3' miRNA: 3'- -UCGCUa-----GCUc----CGCUUgGACGCGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 1197 | 0.67 | 0.542898 |
Target: 5'- uGGCGAucuaaacaaaacUCGGaucaccuuaucuGGCGGGCgCUGCGCGGc- -3' miRNA: 3'- -UCGCU------------AGCU------------CCGCUUG-GACGCGCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 2413 | 0.67 | 0.553797 |
Target: 5'- uGGCu-UCGAGGCGAaGCCcGCGcCGAc- -3' miRNA: 3'- -UCGcuAGCUCCGCU-UGGaCGC-GCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 8458 | 0.67 | 0.553797 |
Target: 5'- cGCGAUCGAgcgcccGGCGcAACCgcucgGCGaCGAc- -3' miRNA: 3'- uCGCUAGCU------CCGC-UUGGa----CGC-GCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 18447 | 0.67 | 0.56476 |
Target: 5'- cGCGAUCucgacgcAGGCGAagaACCUGCucGCGGGc -3' miRNA: 3'- uCGCUAGc------UCCGCU---UGGACG--CGCUUc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 33840 | 0.67 | 0.56476 |
Target: 5'- cGGCGAUCGAacgcaugcagGGCGuacgAGCCUGCgGCa--- -3' miRNA: 3'- -UCGCUAGCU----------CCGC----UUGGACG-CGcuuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 40353 | 0.68 | 0.479248 |
Target: 5'- uGGCcGUCGAGcGCGGccguGCCgcucgucgcGCGCGAGGa -3' miRNA: 3'- -UCGcUAGCUC-CGCU----UGGa--------CGCGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 16845 | 0.69 | 0.438905 |
Target: 5'- cGCGAcaucauccgCGAGGUGuACCgcgGCGCGGAc -3' miRNA: 3'- uCGCUa--------GCUCCGCuUGGa--CGCGCUUc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 39018 | 0.69 | 0.429125 |
Target: 5'- cGCGcaGUCGAcGGCG-GCUUGCuGCGGAGu -3' miRNA: 3'- uCGC--UAGCU-CCGCuUGGACG-CGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 40746 | 0.73 | 0.243353 |
Target: 5'- cGCG-UCGAGGCGAucGCCguugGCGCGc-- -3' miRNA: 3'- uCGCuAGCUCCGCU--UGGa---CGCGCuuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 15849 | 0.72 | 0.277162 |
Target: 5'- cGCGAUCGAGG-GAaacGCCcGCGCGcAGc -3' miRNA: 3'- uCGCUAGCUCCgCU---UGGaCGCGCuUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 30683 | 0.72 | 0.299191 |
Target: 5'- gGGCaGAUCGAccucguacucGGCGAGCaggUGCGCGAGc -3' miRNA: 3'- -UCG-CUAGCU----------CCGCUUGg--ACGCGCUUc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 14704 | 0.71 | 0.314616 |
Target: 5'- cGCGG-CG-GGCGGGCCggGCGCGgcGa -3' miRNA: 3'- uCGCUaGCuCCGCUUGGa-CGCGCuuC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 32293 | 0.71 | 0.314616 |
Target: 5'- gGGCGAUCGucGGGCcAGCCgGCGCGc-- -3' miRNA: 3'- -UCGCUAGC--UCCGcUUGGaCGCGCuuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 5817 | 0.7 | 0.373264 |
Target: 5'- cGGCGAUCGAGucggcGCGggUCgcgaaGgGCGAAGc -3' miRNA: 3'- -UCGCUAGCUC-----CGCuuGGa----CgCGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 35206 | 0.7 | 0.382226 |
Target: 5'- gGGCGAUuCGuuGCGcagcagcuugucGGCCUGCGUGggGc -3' miRNA: 3'- -UCGCUA-GCucCGC------------UUGGACGCGCuuC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 37439 | 0.69 | 0.429125 |
Target: 5'- gAGUGGagCGcGGCGcuuGCCUGCGCGGu- -3' miRNA: 3'- -UCGCUa-GCuCCGCu--UGGACGCGCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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