miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 5' -55.9 NC_005887.1 + 5817 0.7 0.373264
Target:  5'- cGGCGAUCGAGucggcGCGggUCgcgaaGgGCGAAGc -3'
miRNA:   3'- -UCGCUAGCUC-----CGCuuGGa----CgCGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 35206 0.7 0.382226
Target:  5'- gGGCGAUuCGuuGCGcagcagcuugucGGCCUGCGUGggGc -3'
miRNA:   3'- -UCGCUA-GCucCGC------------UUGGACGCGCuuC- -5'
28138 5' -55.9 NC_005887.1 + 37439 0.69 0.429125
Target:  5'- gAGUGGagCGcGGCGcuuGCCUGCGCGGu- -3'
miRNA:   3'- -UCGCUa-GCuCCGCu--UGGACGCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 39018 0.69 0.429125
Target:  5'- cGCGcaGUCGAcGGCG-GCUUGCuGCGGAGu -3'
miRNA:   3'- uCGC--UAGCU-CCGCuUGGACG-CGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 16845 0.69 0.438905
Target:  5'- cGCGAcaucauccgCGAGGUGuACCgcgGCGCGGAc -3'
miRNA:   3'- uCGCUa--------GCUCCGCuUGGa--CGCGCUUc -5'
28138 5' -55.9 NC_005887.1 + 16522 0.67 0.51066
Target:  5'- cGCGGUCGAGcGCauGCCcGCGCGc-- -3'
miRNA:   3'- uCGCUAGCUC-CGcuUGGaCGCGCuuc -5'
28138 5' -55.9 NC_005887.1 + 18297 0.68 0.45884
Target:  5'- cGGCGuggcCGAGGCGAucACCUucGUGCGcAGa -3'
miRNA:   3'- -UCGCua--GCUCCGCU--UGGA--CGCGCuUC- -5'
28138 5' -55.9 NC_005887.1 + 12793 0.68 0.45884
Target:  5'- cGCGAUCGAGcGCauucuGCugCUGCGCGAc- -3'
miRNA:   3'- uCGCUAGCUC-CGcu---UG--GACGCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 8165 0.69 0.448812
Target:  5'- cGGCGAgCGcGGCGAG-CUGCGCGc-- -3'
miRNA:   3'- -UCGCUaGCuCCGCUUgGACGCGCuuc -5'
28138 5' -55.9 NC_005887.1 + 14550 0.69 0.448812
Target:  5'- cGCGG-CG-GGCacGAUCUGCGCGAGGc -3'
miRNA:   3'- uCGCUaGCuCCGc-UUGGACGCGCUUC- -5'
28138 5' -55.9 NC_005887.1 + 24748 0.69 0.448812
Target:  5'- aGGCGGUCGAGGau-GCCgGcCGCGGc- -3'
miRNA:   3'- -UCGCUAGCUCCgcuUGGaC-GCGCUuc -5'
28138 5' -55.9 NC_005887.1 + 16064 0.67 0.532071
Target:  5'- cGGC--UCGcGGCGggUCUGCGCGc-- -3'
miRNA:   3'- -UCGcuAGCuCCGCuuGGACGCGCuuc -5'
28138 5' -55.9 NC_005887.1 + 35480 0.66 0.575778
Target:  5'- -cUGAUCGAcucgugGGCGAagGCCgUGCGCGGGc -3'
miRNA:   3'- ucGCUAGCU------CCGCU--UGG-ACGCGCUUc -5'
28138 5' -55.9 NC_005887.1 + 18034 0.66 0.575778
Target:  5'- uGCGGcCGAugccGGCGAGCCcGCGCa--- -3'
miRNA:   3'- uCGCUaGCU----CCGCUUGGaCGCGcuuc -5'
28138 5' -55.9 NC_005887.1 + 29772 0.66 0.586845
Target:  5'- uGCGAcgCGAcGGCGAguGgCUGCGCGu-- -3'
miRNA:   3'- uCGCUa-GCU-CCGCU--UgGACGCGCuuc -5'
28138 5' -55.9 NC_005887.1 + 37805 0.66 0.59795
Target:  5'- gGGCGGgcUCGuGGaacuucuCCUGCGCGAAu -3'
miRNA:   3'- -UCGCU--AGCuCCgcuu---GGACGCGCUUc -5'
28138 5' -55.9 NC_005887.1 + 32450 0.66 0.59795
Target:  5'- gAGU-AUCGAGGaUGucaaccugauGACCUGCGCGGAu -3'
miRNA:   3'- -UCGcUAGCUCC-GC----------UUGGACGCGCUUc -5'
28138 5' -55.9 NC_005887.1 + 2501 0.66 0.609086
Target:  5'- uAGCGcgCGAGGUGucauUCgucgGCGCGGGc -3'
miRNA:   3'- -UCGCuaGCUCCGCuu--GGa---CGCGCUUc -5'
28138 5' -55.9 NC_005887.1 + 34929 0.66 0.620242
Target:  5'- aGGCGAUCGAGGCcgcGAUCaagucgguUGcCGuCGAAGg -3'
miRNA:   3'- -UCGCUAGCUCCGc--UUGG--------AC-GC-GCUUC- -5'
28138 5' -55.9 NC_005887.1 + 34544 0.76 0.157214
Target:  5'- gGGCGAcagcuucUCGGGcGCGAGCC-GCGCGAAc -3'
miRNA:   3'- -UCGCU-------AGCUC-CGCUUGGaCGCGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.