miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2814 5' -57 NC_001491.2 + 72909 0.66 0.885731
Target:  5'- aGCCGuGCacagcaagagGAUGUUGCGGuuGAGGg -3'
miRNA:   3'- cCGGCuCGga--------CUACGACGCUucCUCC- -5'
2814 5' -57 NC_001491.2 + 45180 0.66 0.878791
Target:  5'- gGGCCGccgcagauuuGGCC-GggGCcGCGgcGGGGGc -3'
miRNA:   3'- -CCGGC----------UCGGaCuaCGaCGCuuCCUCC- -5'
2814 5' -57 NC_001491.2 + 45246 0.66 0.878791
Target:  5'- gGGCCGccgcagauuuGGCC-GggGCcGCGgcGGGGGc -3'
miRNA:   3'- -CCGGC----------UCGGaCuaCGaCGCuuCCUCC- -5'
2814 5' -57 NC_001491.2 + 39081 0.66 0.878791
Target:  5'- uGCgCGAGCCgGAuauuUGCgccgGCGGAGGucccuGGa -3'
miRNA:   3'- cCG-GCUCGGaCU----ACGa---CGCUUCCu----CC- -5'
2814 5' -57 NC_001491.2 + 19602 0.66 0.871636
Target:  5'- uGCCGGGCCgGcaucgccuaaacGUGCcGCGAguuuuagaguuGGGGGGu -3'
miRNA:   3'- cCGGCUCGGaC------------UACGaCGCU-----------UCCUCC- -5'
2814 5' -57 NC_001491.2 + 112834 0.66 0.871636
Target:  5'- -aCCGuGGCCgGAgaugGUUGgGGAGGGGGa -3'
miRNA:   3'- ccGGC-UCGGaCUa---CGACgCUUCCUCC- -5'
2814 5' -57 NC_001491.2 + 123519 0.66 0.865015
Target:  5'- cGGCCGcgggcgcgcagguacGCCgcgGcgGCUGCGuggcGGGGGa -3'
miRNA:   3'- -CCGGCu--------------CGGa--CuaCGACGCuu--CCUCC- -5'
2814 5' -57 NC_001491.2 + 45114 0.66 0.864269
Target:  5'- gGGCCGccgcagauuuGGCC-GggGCcGCGgcGGGGGu -3'
miRNA:   3'- -CCGGC----------UCGGaCuaCGaCGCuuCCUCC- -5'
2814 5' -57 NC_001491.2 + 86912 0.66 0.856698
Target:  5'- uGGgUGAGCUUGg----GCGggGGAGGc -3'
miRNA:   3'- -CCgGCUCGGACuacgaCGCuuCCUCC- -5'
2814 5' -57 NC_001491.2 + 147511 0.67 0.852059
Target:  5'- gGGCCcgggGAGCCUGGUGgCccgggguggccacccUGCGcuuGGGGGc -3'
miRNA:   3'- -CCGG----CUCGGACUAC-G---------------ACGCuu-CCUCC- -5'
2814 5' -57 NC_001491.2 + 139341 0.67 0.840964
Target:  5'- aGGCCGAGCg-GggGagaGCGGuagGGGAGGc -3'
miRNA:   3'- -CCGGCUCGgaCuaCga-CGCU---UCCUCC- -5'
2814 5' -57 NC_001491.2 + 139207 0.67 0.840964
Target:  5'- aGGCCGAGCg-GggGagaGCGGuagGGGAGGc -3'
miRNA:   3'- -CCGGCUCGgaCuaCga-CGCU---UCCUCC- -5'
2814 5' -57 NC_001491.2 + 139153 0.67 0.840964
Target:  5'- aGGCCGAGCg-GggGagaGCGGuagGGGAGGc -3'
miRNA:   3'- -CCGGCUCGgaCuaCga-CGCU---UCCUCC- -5'
2814 5' -57 NC_001491.2 + 139099 0.67 0.840964
Target:  5'- aGGCCGAGCg-GggGagaGCGGuagGGGAGGc -3'
miRNA:   3'- -CCGGCUCGgaCuaCga-CGCU---UCCUCC- -5'
2814 5' -57 NC_001491.2 + 139045 0.67 0.840964
Target:  5'- aGGCCGAGCg-GggGagaGCGGuagGGGAGGc -3'
miRNA:   3'- -CCGGCUCGgaCuaCga-CGCU---UCCUCC- -5'
2814 5' -57 NC_001491.2 + 148327 0.68 0.761831
Target:  5'- aGuCCGGGCCcgaagagGGUGCUG-GAGGuGAGGa -3'
miRNA:   3'- cC-GGCUCGGa------CUACGACgCUUC-CUCC- -5'
2814 5' -57 NC_001491.2 + 142996 0.68 0.752359
Target:  5'- gGGgCGuGGCUUGAgacaGCUGUGuGGGGGGa -3'
miRNA:   3'- -CCgGC-UCGGACUa---CGACGCuUCCUCC- -5'
2814 5' -57 NC_001491.2 + 138113 0.69 0.742783
Target:  5'- cGGCCcccccGGCCgcgGcUGCgGCGAAGGuGGg -3'
miRNA:   3'- -CCGGc----UCGGa--CuACGaCGCUUCCuCC- -5'
2814 5' -57 NC_001491.2 + 125597 0.69 0.713523
Target:  5'- cGGCCGcuGCCgcgGcgGCggccGuCGGAGGGGGg -3'
miRNA:   3'- -CCGGCu-CGGa--CuaCGa---C-GCUUCCUCC- -5'
2814 5' -57 NC_001491.2 + 136341 0.7 0.683651
Target:  5'- cGGCCuucuGAGCUUGcgGCUcaGCcuuuGggGGAGGu -3'
miRNA:   3'- -CCGG----CUCGGACuaCGA--CG----CuuCCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.