miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28140 5' -53.6 NC_005887.1 + 16603 1.07 0.001354
Target:  5'- aAAUCGCCAAGCAGAUCGAGACGACCGa -3'
miRNA:   3'- -UUAGCGGUUCGUCUAGCUCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 16913 0.79 0.128302
Target:  5'- ---aGCCGAGCAGAUCGgcaAGACGACgGg -3'
miRNA:   3'- uuagCGGUUCGUCUAGC---UCUGCUGgC- -5'
28140 5' -53.6 NC_005887.1 + 17060 0.66 0.743617
Target:  5'- --gCGCguGGCGGAUCGGcACGuaGCCGu -3'
miRNA:   3'- uuaGCGguUCGUCUAGCUcUGC--UGGC- -5'
28140 5' -53.6 NC_005887.1 + 17672 0.68 0.57133
Target:  5'- -cUCGCCGcgcuuggcgacgucGGCAcGAuguUCGuGACGGCCGg -3'
miRNA:   3'- uuAGCGGU--------------UCGU-CU---AGCuCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 17814 0.66 0.71068
Target:  5'- uGAUCGCCGAGUcGcUCGAGcACGGgCu -3'
miRNA:   3'- -UUAGCGGUUCGuCuAGCUC-UGCUgGc -5'
28140 5' -53.6 NC_005887.1 + 18224 0.66 0.743617
Target:  5'- --aUGCCGAGCAGcuUCGGcacgacgucGGCGGCCc -3'
miRNA:   3'- uuaGCGGUUCGUCu-AGCU---------CUGCUGGc -5'
28140 5' -53.6 NC_005887.1 + 18617 0.67 0.631499
Target:  5'- cGUUGCUcGGCAGcgCGAucGGCGGCCc -3'
miRNA:   3'- uUAGCGGuUCGUCuaGCU--CUGCUGGc -5'
28140 5' -53.6 NC_005887.1 + 20522 0.68 0.605295
Target:  5'- cAUUGCCGAGCGuguuggacGAaucgaacaggcuguUCGAGACGugCGu -3'
miRNA:   3'- uUAGCGGUUCGU--------CU--------------AGCUCUGCugGC- -5'
28140 5' -53.6 NC_005887.1 + 21558 0.66 0.699518
Target:  5'- cGAUUGCCGgcGGCgaugcgagauAGGUCGAGAaaccCGACCc -3'
miRNA:   3'- -UUAGCGGU--UCG----------UCUAGCUCU----GCUGGc -5'
28140 5' -53.6 NC_005887.1 + 23551 0.72 0.359766
Target:  5'- cGUCGgCAAGCAGAUCaaGGGCGucGCCGg -3'
miRNA:   3'- uUAGCgGUUCGUCUAGc-UCUGC--UGGC- -5'
28140 5' -53.6 NC_005887.1 + 24997 0.67 0.654292
Target:  5'- uAGUUGCCGAGCgucAGcUCGcgccGGCGGCCGc -3'
miRNA:   3'- -UUAGCGGUUCG---UCuAGCu---CUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 26304 0.75 0.26465
Target:  5'- aGAUCGUCGAGCGGAUCG-GAccCGugCGc -3'
miRNA:   3'- -UUAGCGGUUCGUCUAGCuCU--GCugGC- -5'
28140 5' -53.6 NC_005887.1 + 26395 0.66 0.688286
Target:  5'- gGAUCGUCugcgGGUucuGGUCGAGcugGCGGCCGc -3'
miRNA:   3'- -UUAGCGGu---UCGu--CUAGCUC---UGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 27345 0.66 0.721759
Target:  5'- --gCGCCAcgcgcAGCGGcgCGcAGACGAgCGu -3'
miRNA:   3'- uuaGCGGU-----UCGUCuaGC-UCUGCUgGC- -5'
28140 5' -53.6 NC_005887.1 + 30678 0.66 0.71068
Target:  5'- --aUGUCGGGCAGAUCGAccucguacucGGCGAgCa -3'
miRNA:   3'- uuaGCGGUUCGUCUAGCU----------CUGCUgGc -5'
28140 5' -53.6 NC_005887.1 + 30828 0.71 0.42534
Target:  5'- -cUCGCCGcgcGCAcGGUCGAGcUGACCGa -3'
miRNA:   3'- uuAGCGGUu--CGU-CUAGCUCuGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 31341 0.66 0.732742
Target:  5'- -cUCGaCgAGGC-GAUCGAcGCGGCCGa -3'
miRNA:   3'- uuAGC-GgUUCGuCUAGCUcUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 34685 0.71 0.405881
Target:  5'- cGUUGUCGAGCAGcagCG-GGCGGCCGu -3'
miRNA:   3'- uUAGCGGUUCGUCua-GCuCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 34778 0.67 0.654292
Target:  5'- cAUCGCCGcGCaccgcaAGcgCGAcGACGGCCGc -3'
miRNA:   3'- uUAGCGGUuCG------UCuaGCU-CUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 35472 0.69 0.519165
Target:  5'- cGUUGUCGAGCAGGUCGAcauucauccCGACCu -3'
miRNA:   3'- uUAGCGGUUCGUCUAGCUcu-------GCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.