miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28140 5' -53.6 NC_005887.1 + 329 0.68 0.620098
Target:  5'- --gCGCCAcgucuuucGGCaucAGGUCGAGGCG-CCGc -3'
miRNA:   3'- uuaGCGGU--------UCG---UCUAGCUCUGCuGGC- -5'
28140 5' -53.6 NC_005887.1 + 759 0.67 0.654292
Target:  5'- cGUCGgCGAGCAGcAUCGAcucGGCGAgCa -3'
miRNA:   3'- uUAGCgGUUCGUC-UAGCU---CUGCUgGc -5'
28140 5' -53.6 NC_005887.1 + 973 0.66 0.71068
Target:  5'- gGGUCGCgAcGCGGAUCGAaGCcgaGGCCGc -3'
miRNA:   3'- -UUAGCGgUuCGUCUAGCUcUG---CUGGC- -5'
28140 5' -53.6 NC_005887.1 + 1592 0.67 0.631499
Target:  5'- cGGUCGUCGacAGCAGGUCcGGGuacguguuccgcACGGCCGc -3'
miRNA:   3'- -UUAGCGGU--UCGUCUAG-CUC------------UGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 4518 0.67 0.675865
Target:  5'- -cUCGCCGacuacGGCGGcgucccgGUCGAGGCGAUg- -3'
miRNA:   3'- uuAGCGGU-----UCGUC-------UAGCUCUGCUGgc -5'
28140 5' -53.6 NC_005887.1 + 4938 0.67 0.665661
Target:  5'- cAUCGUCGcgAGCGGAUCGAu-CGugCGc -3'
miRNA:   3'- uUAGCGGU--UCGUCUAGCUcuGCugGC- -5'
28140 5' -53.6 NC_005887.1 + 5124 0.66 0.721759
Target:  5'- -cUCGCCAAGC---UCGGcAUGACCGc -3'
miRNA:   3'- uuAGCGGUUCGucuAGCUcUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 5283 0.66 0.699518
Target:  5'- cAGUCGcCCGAGCAGcgCGcGGCGAa-- -3'
miRNA:   3'- -UUAGC-GGUUCGUCuaGCuCUGCUggc -5'
28140 5' -53.6 NC_005887.1 + 7493 0.66 0.743617
Target:  5'- --aCGCCAgcccaaacgaGGCGGcggCGGGuGCGACCGu -3'
miRNA:   3'- uuaGCGGU----------UCGUCua-GCUC-UGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 8533 0.68 0.59734
Target:  5'- cGUCGCCGAGCGGuugCGccGGGCGcUCGa -3'
miRNA:   3'- uUAGCGGUUCGUCua-GC--UCUGCuGGC- -5'
28140 5' -53.6 NC_005887.1 + 9304 0.66 0.743617
Target:  5'- cGAUCGCCGAcgcggcGCAGuUCGcuAgGACCGa -3'
miRNA:   3'- -UUAGCGGUU------CGUCuAGCucUgCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 11845 0.68 0.59734
Target:  5'- --cCGCCGAGCAG--CGAGgACGccGCCGa -3'
miRNA:   3'- uuaGCGGUUCGUCuaGCUC-UGC--UGGC- -5'
28140 5' -53.6 NC_005887.1 + 13608 0.68 0.620098
Target:  5'- cAUCGCUgcuGGCAGcgCGGcgcgcGGCGGCCGc -3'
miRNA:   3'- uUAGCGGu--UCGUCuaGCU-----CUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 14727 0.67 0.631499
Target:  5'- cGAUCGCgCAGGCGacGAUCGAGaaaGCGAUUc -3'
miRNA:   3'- -UUAGCG-GUUCGU--CUAGCUC---UGCUGGc -5'
28140 5' -53.6 NC_005887.1 + 15398 0.69 0.563465
Target:  5'- uGAUCGCgCGcgggcAGCGGAUCGucGACGACg- -3'
miRNA:   3'- -UUAGCG-GU-----UCGUCUAGCu-CUGCUGgc -5'
28140 5' -53.6 NC_005887.1 + 15587 0.67 0.665661
Target:  5'- uGAUCGCCGAagcugagacGCAGcgcacgggcGUCGcgcagcAGGCGGCCGg -3'
miRNA:   3'- -UUAGCGGUU---------CGUC---------UAGC------UCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 15787 0.66 0.71068
Target:  5'- --gCGCagAAGCAGAUCGAuGCGGCa- -3'
miRNA:   3'- uuaGCGg-UUCGUCUAGCUcUGCUGgc -5'
28140 5' -53.6 NC_005887.1 + 16161 0.7 0.496456
Target:  5'- --gCGCCGAGUGcgcgagcGAUCGAGGCGaACCu -3'
miRNA:   3'- uuaGCGGUUCGU-------CUAGCUCUGC-UGGc -5'
28140 5' -53.6 NC_005887.1 + 16265 0.73 0.342373
Target:  5'- cGUCGCCGagcugaugcAGCAGAUCGAcGAUGAgCa -3'
miRNA:   3'- uUAGCGGU---------UCGUCUAGCU-CUGCUgGc -5'
28140 5' -53.6 NC_005887.1 + 16384 0.77 0.190972
Target:  5'- --gCGUCAAuGCAG-UCGAGACGGCCGc -3'
miRNA:   3'- uuaGCGGUU-CGUCuAGCUCUGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.