miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28140 5' -53.6 NC_005887.1 + 16603 1.07 0.001354
Target:  5'- aAAUCGCCAAGCAGAUCGAGACGACCGa -3'
miRNA:   3'- -UUAGCGGUUCGUCUAGCUCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 16913 0.79 0.128302
Target:  5'- ---aGCCGAGCAGAUCGgcaAGACGACgGg -3'
miRNA:   3'- uuagCGGUUCGUCUAGC---UCUGCUGgC- -5'
28140 5' -53.6 NC_005887.1 + 16384 0.77 0.190972
Target:  5'- --gCGUCAAuGCAG-UCGAGACGGCCGc -3'
miRNA:   3'- uuaGCGGUU-CGUCuAGCUCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 26304 0.75 0.26465
Target:  5'- aGAUCGUCGAGCGGAUCG-GAccCGugCGc -3'
miRNA:   3'- -UUAGCGGUUCGUCUAGCuCU--GCugGC- -5'
28140 5' -53.6 NC_005887.1 + 16265 0.73 0.342373
Target:  5'- cGUCGCCGagcugaugcAGCAGAUCGAcGAUGAgCa -3'
miRNA:   3'- uUAGCGGU---------UCGUCUAGCU-CUGCUgGc -5'
28140 5' -53.6 NC_005887.1 + 23551 0.72 0.359766
Target:  5'- cGUCGgCAAGCAGAUCaaGGGCGucGCCGg -3'
miRNA:   3'- uUAGCgGUUCGUCUAGc-UCUGC--UGGC- -5'
28140 5' -53.6 NC_005887.1 + 34685 0.71 0.405881
Target:  5'- cGUUGUCGAGCAGcagCG-GGCGGCCGu -3'
miRNA:   3'- uUAGCGGUUCGUCua-GCuCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 30828 0.71 0.42534
Target:  5'- -cUCGCCGcgcGCAcGGUCGAGcUGACCGa -3'
miRNA:   3'- uuAGCGGUu--CGU-CUAGCUCuGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 40735 0.71 0.435275
Target:  5'- aGGUCGCCGccCGcGUCGAGGCGAUCGc -3'
miRNA:   3'- -UUAGCGGUucGUcUAGCUCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 40013 0.7 0.493249
Target:  5'- cGUCGCgGugcgcaucauggcGCGGcUCGAGGCGGCCGg -3'
miRNA:   3'- uUAGCGgUu------------CGUCuAGCUCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 16161 0.7 0.496456
Target:  5'- --gCGCCGAGUGcgcgagcGAUCGAGGCGaACCu -3'
miRNA:   3'- uuaGCGGUUCGU-------CUAGCUCUGC-UGGc -5'
28140 5' -53.6 NC_005887.1 + 35472 0.69 0.519165
Target:  5'- cGUUGUCGAGCAGGUCGAcauucauccCGACCu -3'
miRNA:   3'- uUAGCGGUUCGUCUAGCUcu-------GCUGGc -5'
28140 5' -53.6 NC_005887.1 + 38328 0.69 0.55228
Target:  5'- cGUCGCCAcugacaacAGCGugucGAUCGAGcgcuCGACCa -3'
miRNA:   3'- uUAGCGGU--------UCGU----CUAGCUCu---GCUGGc -5'
28140 5' -53.6 NC_005887.1 + 15398 0.69 0.563465
Target:  5'- uGAUCGCgCGcgggcAGCGGAUCGucGACGACg- -3'
miRNA:   3'- -UUAGCG-GU-----UCGUCUAGCu-CUGCUGgc -5'
28140 5' -53.6 NC_005887.1 + 17672 0.68 0.57133
Target:  5'- -cUCGCCGcgcuuggcgacgucGGCAcGAuguUCGuGACGGCCGg -3'
miRNA:   3'- uuAGCGGU--------------UCGU-CU---AGCuCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 8533 0.68 0.59734
Target:  5'- cGUCGCCGAGCGGuugCGccGGGCGcUCGa -3'
miRNA:   3'- uUAGCGGUUCGUCua-GC--UCUGCuGGC- -5'
28140 5' -53.6 NC_005887.1 + 11845 0.68 0.59734
Target:  5'- --cCGCCGAGCAG--CGAGgACGccGCCGa -3'
miRNA:   3'- uuaGCGGUUCGUCuaGCUC-UGC--UGGC- -5'
28140 5' -53.6 NC_005887.1 + 20522 0.68 0.605295
Target:  5'- cAUUGCCGAGCGuguuggacGAaucgaacaggcuguUCGAGACGugCGu -3'
miRNA:   3'- uUAGCGGUUCGU--------CU--------------AGCUCUGCugGC- -5'
28140 5' -53.6 NC_005887.1 + 329 0.68 0.620098
Target:  5'- --gCGCCAcgucuuucGGCaucAGGUCGAGGCG-CCGc -3'
miRNA:   3'- uuaGCGGU--------UCG---UCUAGCUCUGCuGGC- -5'
28140 5' -53.6 NC_005887.1 + 13608 0.68 0.620098
Target:  5'- cAUCGCUgcuGGCAGcgCGGcgcgcGGCGGCCGc -3'
miRNA:   3'- uUAGCGGu--UCGUCuaGCU-----CUGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.