miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 2924 0.68 0.328801
Target:  5'- cGC-CGCCGCcaaGCUGCGCaagcgCCGCGg -3'
miRNA:   3'- cCGcGUGGCGca-CGACGUGaa---GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 37521 0.68 0.32407
Target:  5'- cGGCGCACUGCaaaccgcgcaggcaaGcGCcGCGCUccacUCCGCa -3'
miRNA:   3'- -CCGCGUGGCG---------------CaCGaCGUGA----AGGCGc -5'
28141 3' -59.4 NC_005887.1 + 15894 0.68 0.320944
Target:  5'- -uCGCGCCGCGcaagcGCUGCAC--CUGCGc -3'
miRNA:   3'- ccGCGUGGCGCa----CGACGUGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 30501 0.68 0.313228
Target:  5'- uGCGCACCGCaaaaCUGCAUcagcCCGCGu -3'
miRNA:   3'- cCGCGUGGCGcac-GACGUGaa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 3997 0.68 0.313228
Target:  5'- uGCGCGCCGCGgaUGUUGguCUU-CGCc -3'
miRNA:   3'- cCGCGUGGCGC--ACGACguGAAgGCGc -5'
28141 3' -59.4 NC_005887.1 + 14081 0.68 0.313228
Target:  5'- cGGCGCGCCgGCG-GUUGCGgaggCgCGCGg -3'
miRNA:   3'- -CCGCGUGG-CGCaCGACGUgaa-G-GCGC- -5'
28141 3' -59.4 NC_005887.1 + 5159 0.68 0.313228
Target:  5'- cGGCGCGCCGCugaUGCUGauggcaCGCGu -3'
miRNA:   3'- -CCGCGUGGCGc--ACGACgugaagGCGC- -5'
28141 3' -59.4 NC_005887.1 + 23345 0.68 0.310182
Target:  5'- cGGCGCggGCUGCGgcaaccgccacgaGCUGCGcCUUuuGCGc -3'
miRNA:   3'- -CCGCG--UGGCGCa------------CGACGU-GAAggCGC- -5'
28141 3' -59.4 NC_005887.1 + 407 0.68 0.305654
Target:  5'- cGCGCACaUGCGacgGCUcgcGCACUUCCuCGg -3'
miRNA:   3'- cCGCGUG-GCGCa--CGA---CGUGAAGGcGC- -5'
28141 3' -59.4 NC_005887.1 + 16452 0.69 0.298221
Target:  5'- cGCGUGCgCGCGgGCaUGCGCUcgaCCGCGc -3'
miRNA:   3'- cCGCGUG-GCGCaCG-ACGUGAa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 14555 0.69 0.298221
Target:  5'- --aGCACCGCG-GCggGCACgaUCUGCGc -3'
miRNA:   3'- ccgCGUGGCGCaCGa-CGUGa-AGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 1556 0.69 0.276765
Target:  5'- cGGcCGCGCCGCGcgaGCgccGCACgccgUCgGCGu -3'
miRNA:   3'- -CC-GCGUGGCGCa--CGa--CGUGa---AGgCGC- -5'
28141 3' -59.4 NC_005887.1 + 35641 0.69 0.276765
Target:  5'- aGGCcaagGCCGUGUGCccgGCGCUcgCCGCa -3'
miRNA:   3'- -CCGcg--UGGCGCACGa--CGUGAa-GGCGc -5'
28141 3' -59.4 NC_005887.1 + 42083 0.69 0.276765
Target:  5'- aGCGCugUcGCGUGggGCGCgaugCCGCGu -3'
miRNA:   3'- cCGCGugG-CGCACgaCGUGaa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 27232 0.69 0.276071
Target:  5'- gGGCGCAUCGCGgcgcaacUGCaucGCGCgccggcCCGCGu -3'
miRNA:   3'- -CCGCGUGGCGC-------ACGa--CGUGaa----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 14029 0.69 0.269892
Target:  5'- aGGUGCACCGUGaccgGC-GCGCccgucuugUCCGUGa -3'
miRNA:   3'- -CCGCGUGGCGCa---CGaCGUGa-------AGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 5434 0.69 0.269892
Target:  5'- cGGCGCgaccacGCCGCccGCUgGCACUccugCCGCa -3'
miRNA:   3'- -CCGCG------UGGCGcaCGA-CGUGAa---GGCGc -5'
28141 3' -59.4 NC_005887.1 + 32745 0.69 0.263157
Target:  5'- cGGCGC-UCGCGUGC-GCGCcggCgCGCGc -3'
miRNA:   3'- -CCGCGuGGCGCACGaCGUGaa-G-GCGC- -5'
28141 3' -59.4 NC_005887.1 + 24956 0.69 0.263157
Target:  5'- cGCGgGCCGCcuUGC-GCGCggCCGCGa -3'
miRNA:   3'- cCGCgUGGCGc-ACGaCGUGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 471 0.7 0.256559
Target:  5'- cGGCGCGgCGCGUcuucGCgGCGCUUgcCCGUc -3'
miRNA:   3'- -CCGCGUgGCGCA----CGaCGUGAA--GGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.