miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 5556 0.67 0.361636
Target:  5'- cGGUGCugcgGCCG-GUGCUGCGCcaucggcCUGCGu -3'
miRNA:   3'- -CCGCG----UGGCgCACGACGUGaa-----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 8156 0.71 0.219786
Target:  5'- cGGCGaGCUGCGcGC-GCGCUUUCGUGa -3'
miRNA:   3'- -CCGCgUGGCGCaCGaCGUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 8645 0.66 0.424365
Target:  5'- aGCGUcgaacgaaaccuGCUGCgGUGCUGC-CUUCgGCa -3'
miRNA:   3'- cCGCG------------UGGCG-CACGACGuGAAGgCGc -5'
28141 3' -59.4 NC_005887.1 + 8702 0.7 0.243771
Target:  5'- cGGCGaucCGCCGCG-GCgguaaGCGCUUCguCGCGg -3'
miRNA:   3'- -CCGC---GUGGCGCaCGa----CGUGAAG--GCGC- -5'
28141 3' -59.4 NC_005887.1 + 8915 0.7 0.237578
Target:  5'- gGGCGCGCCgGCGUucacaaGCUGC----CCGCGa -3'
miRNA:   3'- -CCGCGUGG-CGCA------CGACGugaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 9912 0.71 0.208566
Target:  5'- cGGCGCGCgGCGUucagguugGCcGCGCUgaccggCUGCGa -3'
miRNA:   3'- -CCGCGUGgCGCA--------CGaCGUGAa-----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 11055 0.66 0.424365
Target:  5'- aGGCGUGgacacugauuuCCGCGccGCUGCucaaacgaUUCCGCGu -3'
miRNA:   3'- -CCGCGU-----------GGCGCa-CGACGug------AAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 11458 0.73 0.147126
Target:  5'- cGGCGCcgGCCGCcagcgcuccgGCUGCGCUgacgcCCGCGc -3'
miRNA:   3'- -CCGCG--UGGCGca--------CGACGUGAa----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 11609 0.7 0.225587
Target:  5'- cGCGCGCUGCGcgccgagcUGCUGaucaGCUUgaCCGCGu -3'
miRNA:   3'- cCGCGUGGCGC--------ACGACg---UGAA--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 12198 0.7 0.249459
Target:  5'- uGGCGCGCgacgGCGgccUGCUcguccugGCGCUUCUGCGc -3'
miRNA:   3'- -CCGCGUGg---CGC---ACGA-------CGUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 12271 0.72 0.187606
Target:  5'- cGGCGCGCC-CG-GCgcgGCGCUguccUUCGCGg -3'
miRNA:   3'- -CCGCGUGGcGCaCGa--CGUGA----AGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 12785 0.66 0.405782
Target:  5'- aGCGCAuuCUGC-UGCUGCGCgaCCaGCGu -3'
miRNA:   3'- cCGCGU--GGCGcACGACGUGaaGG-CGC- -5'
28141 3' -59.4 NC_005887.1 + 13625 0.7 0.250098
Target:  5'- cGGCGCGCgGCG-GCcGCACUcagCCGa- -3'
miRNA:   3'- -CCGCGUGgCGCaCGaCGUGAa--GGCgc -5'
28141 3' -59.4 NC_005887.1 + 13681 0.67 0.361636
Target:  5'- cGGC-CGCCGCGcGCcGCGCUgCCaGCa -3'
miRNA:   3'- -CCGcGUGGCGCaCGaCGUGAaGG-CGc -5'
28141 3' -59.4 NC_005887.1 + 14029 0.69 0.269892
Target:  5'- aGGUGCACCGUGaccgGC-GCGCccgucuugUCCGUGa -3'
miRNA:   3'- -CCGCGUGGCGCa---CGaCGUGa-------AGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 14081 0.68 0.313228
Target:  5'- cGGCGCGCCgGCG-GUUGCGgaggCgCGCGg -3'
miRNA:   3'- -CCGCGUGG-CGCaCGACGUgaa-G-GCGC- -5'
28141 3' -59.4 NC_005887.1 + 14221 0.66 0.41501
Target:  5'- gGGCgGCGCCGCGcUGUucgGCGCggcaUCCGa- -3'
miRNA:   3'- -CCG-CGUGGCGC-ACGa--CGUGa---AGGCgc -5'
28141 3' -59.4 NC_005887.1 + 14515 0.66 0.443448
Target:  5'- uGGUGguCCGCuUGCagGCGCggCCGuCGg -3'
miRNA:   3'- -CCGCguGGCGcACGa-CGUGaaGGC-GC- -5'
28141 3' -59.4 NC_005887.1 + 14555 0.69 0.298221
Target:  5'- --aGCACCGCG-GCggGCACgaUCUGCGc -3'
miRNA:   3'- ccgCGUGGCGCaCGa-CGUGa-AGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 14706 0.68 0.328801
Target:  5'- gGGCaGCACCGCGccgGCUGC-CgugagCGCGc -3'
miRNA:   3'- -CCG-CGUGGCGCa--CGACGuGaag--GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.