miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 368 0.7 0.243771
Target:  5'- cGCGCACCGCGgccucGCUgaucacgccacGCAgUUcCCGCGc -3'
miRNA:   3'- cCGCGUGGCGCa----CGA-----------CGUgAA-GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 407 0.68 0.305654
Target:  5'- cGCGCACaUGCGacgGCUcgcGCACUUCCuCGg -3'
miRNA:   3'- cCGCGUG-GCGCa--CGA---CGUGAAGGcGC- -5'
28141 3' -59.4 NC_005887.1 + 417 0.67 0.386831
Target:  5'- -aCGCGCCGCGccgcccgcuguUGCUGCGCUcgaacccUCUgGCGc -3'
miRNA:   3'- ccGCGUGGCGC-----------ACGACGUGA-------AGG-CGC- -5'
28141 3' -59.4 NC_005887.1 + 471 0.7 0.256559
Target:  5'- cGGCGCGgCGCGUcuucGCgGCGCUUgcCCGUc -3'
miRNA:   3'- -CCGCGUgGCGCA----CGaCGUGAA--GGCGc -5'
28141 3' -59.4 NC_005887.1 + 1029 0.73 0.151197
Target:  5'- cGGCGauCACCuCGUGCUGCACgccUUCGCc -3'
miRNA:   3'- -CCGC--GUGGcGCACGACGUGa--AGGCGc -5'
28141 3' -59.4 NC_005887.1 + 1234 0.67 0.396685
Target:  5'- gGGCGCugCGCGgcGCUcaGCACgcgaaaacgUCGCa -3'
miRNA:   3'- -CCGCGugGCGCa-CGA--CGUGaa-------GGCGc -5'
28141 3' -59.4 NC_005887.1 + 1487 0.68 0.328801
Target:  5'- cGGCGUGCgGCGcucGCgcgGCGCggCCGUGc -3'
miRNA:   3'- -CCGCGUGgCGCa--CGa--CGUGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 1556 0.69 0.276765
Target:  5'- cGGcCGCGCCGCGcgaGCgccGCACgccgUCgGCGu -3'
miRNA:   3'- -CC-GCGUGGCGCa--CGa--CGUGa---AGgCGC- -5'
28141 3' -59.4 NC_005887.1 + 2094 0.7 0.243771
Target:  5'- cGGUGCACCcggacuauGCGgauucGCUGCACUgcaagCCGUu -3'
miRNA:   3'- -CCGCGUGG--------CGCa----CGACGUGAa----GGCGc -5'
28141 3' -59.4 NC_005887.1 + 2734 0.67 0.396685
Target:  5'- cGCGCACCaG-GUGCuUGUGCUcgcCCGCGc -3'
miRNA:   3'- cCGCGUGG-CgCACG-ACGUGAa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 2924 0.68 0.328801
Target:  5'- cGC-CGCCGCcaaGCUGCGCaagcgCCGCGg -3'
miRNA:   3'- cCGcGUGGCGca-CGACGUGaa---GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 3248 0.68 0.344938
Target:  5'- -cCGCGCCGCucgcGCUGCGCaacuucgucgCCGCGa -3'
miRNA:   3'- ccGCGUGGCGca--CGACGUGaa--------GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 3368 0.66 0.433846
Target:  5'- aGGCGUACCuGCagggagugGUGC-GCACgcuguucgCCGCGc -3'
miRNA:   3'- -CCGCGUGG-CG--------CACGaCGUGaa------GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 3997 0.68 0.313228
Target:  5'- uGCGCGCCGCGgaUGUUGguCUU-CGCc -3'
miRNA:   3'- cCGCGUGGCGC--ACGACguGAAgGCGc -5'
28141 3' -59.4 NC_005887.1 + 4215 0.68 0.344938
Target:  5'- cGCGCGCaggagaaagGCGUGCUGCucgcgccgacGCUcggCCGCa -3'
miRNA:   3'- cCGCGUGg--------CGCACGACG----------UGAa--GGCGc -5'
28141 3' -59.4 NC_005887.1 + 4682 0.67 0.378889
Target:  5'- cGGCcaccgGCGCCGCGgcgagcaucUGUUGCAUcUgCGCGg -3'
miRNA:   3'- -CCG-----CGUGGCGC---------ACGACGUGaAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 5159 0.68 0.313228
Target:  5'- cGGCGCGCCGCugaUGCUGauggcaCGCGu -3'
miRNA:   3'- -CCGCGUGGCGc--ACGACgugaagGCGC- -5'
28141 3' -59.4 NC_005887.1 + 5361 0.67 0.378889
Target:  5'- uGGCGUagaacuucGCCGCGcGCUGCucggGCgaCUGCGu -3'
miRNA:   3'- -CCGCG--------UGGCGCaCGACG----UGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 5434 0.69 0.269892
Target:  5'- cGGCGCgaccacGCCGCccGCUgGCACUccugCCGCa -3'
miRNA:   3'- -CCGCG------UGGCGcaCGA-CGUGAa---GGCGc -5'
28141 3' -59.4 NC_005887.1 + 5486 0.66 0.443447
Target:  5'- uGGuCGCGCCG-GUcGCUGCGgcgCCGCc -3'
miRNA:   3'- -CC-GCGUGGCgCA-CGACGUgaaGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.