miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 17316 1.11 0.000203
Target:  5'- cGGCGCACCGCGUGCUGCACUUCCGCGa -3'
miRNA:   3'- -CCGCGUGGCGCACGACGUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 27641 0.81 0.037663
Target:  5'- cGGCGCGCuCGC--GCUGUACUUCCGCu -3'
miRNA:   3'- -CCGCGUG-GCGcaCGACGUGAAGGCGc -5'
28141 3' -59.4 NC_005887.1 + 40143 0.77 0.077358
Target:  5'- uGCGCGCUGCGcGCcGCGCUcgCCGCGu -3'
miRNA:   3'- cCGCGUGGCGCaCGaCGUGAa-GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 31212 0.76 0.084237
Target:  5'- cGgGCGCCGCGUGCUucaGCACga-CGCGa -3'
miRNA:   3'- cCgCGUGGCGCACGA---CGUGaagGCGC- -5'
28141 3' -59.4 NC_005887.1 + 28568 0.76 0.089142
Target:  5'- aGGCGuCGCCGCccGCUGCGCggaCGCGg -3'
miRNA:   3'- -CCGC-GUGGCGcaCGACGUGaagGCGC- -5'
28141 3' -59.4 NC_005887.1 + 17260 0.74 0.135505
Target:  5'- cGGCGCaacauuGCCGCGUGCgGCcGCgUUCGCGc -3'
miRNA:   3'- -CCGCG------UGGCGCACGaCG-UGaAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 11458 0.73 0.147126
Target:  5'- cGGCGCcgGCCGCcagcgcuccgGCUGCGCUgacgcCCGCGc -3'
miRNA:   3'- -CCGCG--UGGCGca--------CGACGUGAa----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 1029 0.73 0.151197
Target:  5'- cGGCGauCACCuCGUGCUGCACgccUUCGCc -3'
miRNA:   3'- -CCGC--GUGGcGCACGACGUGa--AGGCGc -5'
28141 3' -59.4 NC_005887.1 + 15257 0.73 0.155371
Target:  5'- aGGCa-GCCGCaGUGCUGCGCggcgagcgUCCGCc -3'
miRNA:   3'- -CCGcgUGGCG-CACGACGUGa-------AGGCGc -5'
28141 3' -59.4 NC_005887.1 + 18334 0.72 0.182664
Target:  5'- gGGCGCAUCgGCGacaUGCgacguucggGCgACUUCCGCGu -3'
miRNA:   3'- -CCGCGUGG-CGC---ACGa--------CG-UGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 32805 0.72 0.187606
Target:  5'- cGGCGCGCaCGCGaGCgccGCGCUaccccgCCGUGg -3'
miRNA:   3'- -CCGCGUG-GCGCaCGa--CGUGAa-----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 12271 0.72 0.187606
Target:  5'- cGGCGCGCC-CG-GCgcgGCGCUguccUUCGCGg -3'
miRNA:   3'- -CCGCGUGGcGCaCGa--CGUGA----AGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 36656 0.71 0.192154
Target:  5'- aGGUGCGCgGCGUcaucuauGCaUGCACUaCUGCGa -3'
miRNA:   3'- -CCGCGUGgCGCA-------CG-ACGUGAaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 40766 0.71 0.197844
Target:  5'- uGGCGCGCCGCGcGCcGC-CgagCCgGCGg -3'
miRNA:   3'- -CCGCGUGGCGCaCGaCGuGaa-GG-CGC- -5'
28141 3' -59.4 NC_005887.1 + 9912 0.71 0.208566
Target:  5'- cGGCGCGCgGCGUucagguugGCcGCGCUgaccggCUGCGa -3'
miRNA:   3'- -CCGCGUGgCGCA--------CGaCGUGAa-----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 32668 0.71 0.214113
Target:  5'- cGGUGUcgCGCGUGC-GCGCUUCgGCa -3'
miRNA:   3'- -CCGCGugGCGCACGaCGUGAAGgCGc -5'
28141 3' -59.4 NC_005887.1 + 8156 0.71 0.219786
Target:  5'- cGGCGaGCUGCGcGC-GCGCUUUCGUGa -3'
miRNA:   3'- -CCGCgUGGCGCaCGaCGUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 14943 0.71 0.219786
Target:  5'- uGGCGCauucuGCCGCGcggUGC-GCGCUguugCUGCGg -3'
miRNA:   3'- -CCGCG-----UGGCGC---ACGaCGUGAa---GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 35333 0.7 0.225587
Target:  5'- cGCGCGCCGCGgcgGCcgGCcacgaGCUUCaCGCc -3'
miRNA:   3'- cCGCGUGGCGCa--CGa-CG-----UGAAG-GCGc -5'
28141 3' -59.4 NC_005887.1 + 16937 0.7 0.225587
Target:  5'- gGGCGCGauGCGUGa-GCGCUUcaaCCGCGc -3'
miRNA:   3'- -CCGCGUggCGCACgaCGUGAA---GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.