miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 42083 0.69 0.276765
Target:  5'- aGCGCugUcGCGUGggGCGCgaugCCGCGu -3'
miRNA:   3'- cCGCGugG-CGCACgaCGUGaa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 2094 0.7 0.243771
Target:  5'- cGGUGCACCcggacuauGCGgauucGCUGCACUgcaagCCGUu -3'
miRNA:   3'- -CCGCGUGG--------CGCa----CGACGUGAa----GGCGc -5'
28141 3' -59.4 NC_005887.1 + 8702 0.7 0.243771
Target:  5'- cGGCGaucCGCCGCG-GCgguaaGCGCUUCguCGCGg -3'
miRNA:   3'- -CCGC---GUGGCGCaCGa----CGUGAAG--GCGC- -5'
28141 3' -59.4 NC_005887.1 + 41952 0.7 0.250098
Target:  5'- cGGCGUGCuCGCGUGgUGCG--UgCGCGg -3'
miRNA:   3'- -CCGCGUG-GCGCACgACGUgaAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 13625 0.7 0.250098
Target:  5'- cGGCGCGCgGCG-GCcGCACUcagCCGa- -3'
miRNA:   3'- -CCGCGUGgCGCaCGaCGUGAa--GGCgc -5'
28141 3' -59.4 NC_005887.1 + 24956 0.69 0.263157
Target:  5'- cGCGgGCCGCcuUGC-GCGCggCCGCGa -3'
miRNA:   3'- cCGCgUGGCGc-ACGaCGUGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 32745 0.69 0.263157
Target:  5'- cGGCGC-UCGCGUGC-GCGCcggCgCGCGc -3'
miRNA:   3'- -CCGCGuGGCGCACGaCGUGaa-G-GCGC- -5'
28141 3' -59.4 NC_005887.1 + 5434 0.69 0.269892
Target:  5'- cGGCGCgaccacGCCGCccGCUgGCACUccugCCGCa -3'
miRNA:   3'- -CCGCG------UGGCGcaCGA-CGUGAa---GGCGc -5'
28141 3' -59.4 NC_005887.1 + 27232 0.69 0.276071
Target:  5'- gGGCGCAUCGCGgcgcaacUGCaucGCGCgccggcCCGCGu -3'
miRNA:   3'- -CCGCGUGGCGC-------ACGa--CGUGaa----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 22415 0.7 0.231517
Target:  5'- cGCGaACCucguCGUGCUGCugUUCUGCa -3'
miRNA:   3'- cCGCgUGGc---GCACGACGugAAGGCGc -5'
28141 3' -59.4 NC_005887.1 + 35333 0.7 0.225587
Target:  5'- cGCGCGCCGCGgcgGCcgGCcacgaGCUUCaCGCc -3'
miRNA:   3'- cCGCGUGGCGCa--CGa-CG-----UGAAG-GCGc -5'
28141 3' -59.4 NC_005887.1 + 14877 0.7 0.225587
Target:  5'- cGCGCACCGCGcgGCagaaUGCGCcagCUGCu -3'
miRNA:   3'- cCGCGUGGCGCa-CG----ACGUGaa-GGCGc -5'
28141 3' -59.4 NC_005887.1 + 40143 0.77 0.077358
Target:  5'- uGCGCGCUGCGcGCcGCGCUcgCCGCGu -3'
miRNA:   3'- cCGCGUGGCGCaCGaCGUGAa-GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 31212 0.76 0.084237
Target:  5'- cGgGCGCCGCGUGCUucaGCACga-CGCGa -3'
miRNA:   3'- cCgCGUGGCGCACGA---CGUGaagGCGC- -5'
28141 3' -59.4 NC_005887.1 + 28568 0.76 0.089142
Target:  5'- aGGCGuCGCCGCccGCUGCGCggaCGCGg -3'
miRNA:   3'- -CCGC-GUGGCGcaCGACGUGaagGCGC- -5'
28141 3' -59.4 NC_005887.1 + 15257 0.73 0.155371
Target:  5'- aGGCa-GCCGCaGUGCUGCGCggcgagcgUCCGCc -3'
miRNA:   3'- -CCGcgUGGCG-CACGACGUGa-------AGGCGc -5'
28141 3' -59.4 NC_005887.1 + 18334 0.72 0.182664
Target:  5'- gGGCGCAUCgGCGacaUGCgacguucggGCgACUUCCGCGu -3'
miRNA:   3'- -CCGCGUGG-CGC---ACGa--------CG-UGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 40766 0.71 0.197844
Target:  5'- uGGCGCGCCGCGcGCcGC-CgagCCgGCGg -3'
miRNA:   3'- -CCGCGUGGCGCaCGaCGuGaa-GG-CGC- -5'
28141 3' -59.4 NC_005887.1 + 32668 0.71 0.214113
Target:  5'- cGGUGUcgCGCGUGC-GCGCUUCgGCa -3'
miRNA:   3'- -CCGCGugGCGCACGaCGUGAAGgCGc -5'
28141 3' -59.4 NC_005887.1 + 16937 0.7 0.225587
Target:  5'- gGGCGCGauGCGUGa-GCGCUUcaaCCGCGc -3'
miRNA:   3'- -CCGCGUggCGCACgaCGUGAA---GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.