miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 5' -51.9 NC_005887.1 + 17259 0.66 0.817255
Target:  5'- gGCGCAacauUGCcgcGUGCGGCCGC--GUUCg -3'
miRNA:   3'- gCGUGU----ACGu--CAUGUUGGCGguCAAG- -5'
28141 5' -51.9 NC_005887.1 + 17351 1.11 0.000993
Target:  5'- gCGCACAUGCAGUACAACCGCCAGUUCg -3'
miRNA:   3'- -GCGUGUACGUCAUGUUGGCGGUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 23344 0.67 0.744084
Target:  5'- gGCGCggGCuGcgGCAACCGCCAc--- -3'
miRNA:   3'- gCGUGuaCGuCa-UGUUGGCGGUcaag -5'
28141 5' -51.9 NC_005887.1 + 23465 0.66 0.807351
Target:  5'- aCGCGC-UGC--UGCGGCUGCCAGc-- -3'
miRNA:   3'- -GCGUGuACGucAUGUUGGCGGUCaag -5'
28141 5' -51.9 NC_005887.1 + 24009 0.66 0.817255
Target:  5'- gGUGCGUGCGcagACGGCCGCgAGg-- -3'
miRNA:   3'- gCGUGUACGUca-UGUUGGCGgUCaag -5'
28141 5' -51.9 NC_005887.1 + 25015 0.68 0.664746
Target:  5'- uCGCGCcgGCGGccgcCGGCCaGCCGGUa- -3'
miRNA:   3'- -GCGUGuaCGUCau--GUUGG-CGGUCAag -5'
28141 5' -51.9 NC_005887.1 + 25089 0.69 0.618374
Target:  5'- gCGCuACcgGCuGgccgGCGGCCGCCGGcgCg -3'
miRNA:   3'- -GCG-UGuaCGuCa---UGUUGGCGGUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 25627 0.67 0.765819
Target:  5'- uCGCACucaAUGCugauGUGCAgguugagcuucACCGCCAGc-- -3'
miRNA:   3'- -GCGUG---UACGu---CAUGU-----------UGGCGGUCaag -5'
28141 5' -51.9 NC_005887.1 + 26498 0.73 0.406897
Target:  5'- uCGCGCGgcUGCAGcgcgcguucccgcGCGGCCGCCAGcUCg -3'
miRNA:   3'- -GCGUGU--ACGUCa------------UGUUGGCGGUCaAG- -5'
28141 5' -51.9 NC_005887.1 + 27304 0.68 0.71057
Target:  5'- gCGCGCgAUGCAGUugcgccGCGAUgCGCCcguGUUCu -3'
miRNA:   3'- -GCGUG-UACGUCA------UGUUG-GCGGu--CAAG- -5'
28141 5' -51.9 NC_005887.1 + 28213 0.66 0.807351
Target:  5'- cCGCGCGUcucgGCGGUuuugaGCAGCgCGCgCAGcUUCg -3'
miRNA:   3'- -GCGUGUA----CGUCA-----UGUUG-GCG-GUC-AAG- -5'
28141 5' -51.9 NC_005887.1 + 29751 0.72 0.472312
Target:  5'- uGCGCGUGCAGcugccaaGCAAgCGCCAGc-- -3'
miRNA:   3'- gCGUGUACGUCa------UGUUgGCGGUCaag -5'
28141 5' -51.9 NC_005887.1 + 30566 0.69 0.592913
Target:  5'- gGCugAUGCAGUuuugcggugcgcaacGCAcgggccgcgucgcgcACCGCCuGUUCc -3'
miRNA:   3'- gCGugUACGUCA---------------UGU---------------UGGCGGuCAAG- -5'
28141 5' -51.9 NC_005887.1 + 30809 0.66 0.786943
Target:  5'- gGCGC--GCAccGCGGCCucgGCCAGUUCg -3'
miRNA:   3'- gCGUGuaCGUcaUGUUGG---CGGUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 32673 0.74 0.340485
Target:  5'- uCGCGCGUGCGcgcuucggcaaccgcGUACAgcgcacggauaGCCGCgCGGUUCa -3'
miRNA:   3'- -GCGUGUACGU---------------CAUGU-----------UGGCG-GUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 34566 0.66 0.807351
Target:  5'- uGgGCGUGCAGUACcACgGuCCGGg-- -3'
miRNA:   3'- gCgUGUACGUCAUGuUGgC-GGUCaag -5'
28141 5' -51.9 NC_005887.1 + 34922 0.67 0.755021
Target:  5'- uCGCGCuGUGCGGaacuUGCcgUCGCCGGcUUCg -3'
miRNA:   3'- -GCGUG-UACGUC----AUGuuGGCGGUC-AAG- -5'
28141 5' -51.9 NC_005887.1 + 36576 0.7 0.560779
Target:  5'- cCGCcCGaugcUGCGGU-CGACCGCaCGGUUCc -3'
miRNA:   3'- -GCGuGU----ACGUCAuGUUGGCG-GUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 37471 0.71 0.515782
Target:  5'- gCGUGCAgGCAGUcGCGACCGCgCAGcgCc -3'
miRNA:   3'- -GCGUGUaCGUCA-UGUUGGCG-GUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 38604 0.73 0.420723
Target:  5'- aGCGCgAUGUAGcGCuuCgGCCAGUUCg -3'
miRNA:   3'- gCGUG-UACGUCaUGuuGgCGGUCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.