miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 5' -51.9 NC_005887.1 + 457 0.66 0.807351
Target:  5'- gGCGCGUGUGGUGCGggcaugagcaagcugACCGCaaagcagcagcuGUUCg -3'
miRNA:   3'- gCGUGUACGUCAUGU---------------UGGCGgu----------CAAG- -5'
28141 5' -51.9 NC_005887.1 + 3586 0.72 0.450241
Target:  5'- aCGCACGUGCAGUgggagcucacguuGCGccagGCCGCgCAGcgCu -3'
miRNA:   3'- -GCGUGUACGUCA-------------UGU----UGGCG-GUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 3736 0.69 0.595222
Target:  5'- cCGCGCAaGCuGgACGGCCGCaacaugCAGUUCg -3'
miRNA:   3'- -GCGUGUaCGuCaUGUUGGCG------GUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 3798 0.67 0.765819
Target:  5'- cCGCAuCGUGCAGaACAGCgGCU--UUCg -3'
miRNA:   3'- -GCGU-GUACGUCaUGUUGgCGGucAAG- -5'
28141 5' -51.9 NC_005887.1 + 3850 0.7 0.538119
Target:  5'- uGCACgAUGCGGUcGCGGCCcucgucgaGCCAGUa- -3'
miRNA:   3'- gCGUG-UACGUCA-UGUUGG--------CGGUCAag -5'
28141 5' -51.9 NC_005887.1 + 5183 0.68 0.71057
Target:  5'- aCGCGuCGaGguGUGCAGCaagaGCCAGUa- -3'
miRNA:   3'- -GCGU-GUaCguCAUGUUGg---CGGUCAag -5'
28141 5' -51.9 NC_005887.1 + 5483 0.7 0.583693
Target:  5'- uCGCGCcggucgcUGCGGcGCcgcCCGCCGGUUCa -3'
miRNA:   3'- -GCGUGu------ACGUCaUGuu-GGCGGUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 5588 0.67 0.765819
Target:  5'- uCGUGCGUGCcugcugcggccGGUGCuGCgGCCGGUg- -3'
miRNA:   3'- -GCGUGUACG-----------UCAUGuUGgCGGUCAag -5'
28141 5' -51.9 NC_005887.1 + 6831 0.71 0.504754
Target:  5'- aGUGCGUGCGGUAaccuuccaucCGACCGCC-GUUg -3'
miRNA:   3'- gCGUGUACGUCAU----------GUUGGCGGuCAAg -5'
28141 5' -51.9 NC_005887.1 + 7362 0.68 0.653174
Target:  5'- uCGCGC-UGCAGaccgACGACaaCGCCGcGUUCa -3'
miRNA:   3'- -GCGUGuACGUCa---UGUUG--GCGGU-CAAG- -5'
28141 5' -51.9 NC_005887.1 + 10182 0.67 0.755021
Target:  5'- uCGUACGUGCAGccgauCAgcugGCCGUCGGcgCg -3'
miRNA:   3'- -GCGUGUACGUCau---GU----UGGCGGUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 11812 0.66 0.807351
Target:  5'- uCGUACGcuaagGCAG-GCGGCgGCCuGUUCu -3'
miRNA:   3'- -GCGUGUa----CGUCaUGUUGgCGGuCAAG- -5'
28141 5' -51.9 NC_005887.1 + 12625 0.67 0.755021
Target:  5'- uGCGCAUGCcg-GCGGCCGUCGa--- -3'
miRNA:   3'- gCGUGUACGucaUGUUGGCGGUcaag -5'
28141 5' -51.9 NC_005887.1 + 13708 0.66 0.807351
Target:  5'- uGCACgucgGUGCugcucggcugAGUGCGGCCGCCGc--- -3'
miRNA:   3'- gCGUG----UACG----------UCAUGUUGGCGGUcaag -5'
28141 5' -51.9 NC_005887.1 + 14089 0.66 0.807351
Target:  5'- uGCGCcgGCGGcGCG-CCGgCGGUUg -3'
miRNA:   3'- gCGUGuaCGUCaUGUuGGCgGUCAAg -5'
28141 5' -51.9 NC_005887.1 + 14410 0.68 0.664746
Target:  5'- gGCACGcUGCuucACGAUCGCCGcGUUCa -3'
miRNA:   3'- gCGUGU-ACGucaUGUUGGCGGU-CAAG- -5'
28141 5' -51.9 NC_005887.1 + 14634 0.68 0.665902
Target:  5'- gCGCGCucacggcagccggcGCGGUGCuGCCcgucGCCGGUUCg -3'
miRNA:   3'- -GCGUGua------------CGUCAUGuUGG----CGGUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 14944 0.67 0.721845
Target:  5'- cCGCGCGcUGCcGUACGACgCGCCGc--- -3'
miRNA:   3'- -GCGUGU-ACGuCAUGUUG-GCGGUcaag -5'
28141 5' -51.9 NC_005887.1 + 15320 0.69 0.629976
Target:  5'- cCGCGCA-GCAcUGCGGCUGCCuGcUUCg -3'
miRNA:   3'- -GCGUGUaCGUcAUGUUGGCGGuC-AAG- -5'
28141 5' -51.9 NC_005887.1 + 16372 0.71 0.514675
Target:  5'- uGCACcagaagugcgucaAUGCAGUcgagACGGCCGCCGGc-- -3'
miRNA:   3'- gCGUG-------------UACGUCA----UGUUGGCGGUCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.