miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 5' -51.9 NC_005887.1 + 17351 1.11 0.000993
Target:  5'- gCGCACAUGCAGUACAACCGCCAGUUCg -3'
miRNA:   3'- -GCGUGUACGUCAUGUUGGCGGUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 32673 0.74 0.340485
Target:  5'- uCGCGCGUGCGcgcuucggcaaccgcGUACAgcgcacggauaGCCGCgCGGUUCa -3'
miRNA:   3'- -GCGUGUACGU---------------CAUGU-----------UGGCG-GUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 26498 0.73 0.406897
Target:  5'- uCGCGCGgcUGCAGcgcgcguucccgcGCGGCCGCCAGcUCg -3'
miRNA:   3'- -GCGUGU--ACGUCa------------UGUUGGCGGUCaAG- -5'
28141 5' -51.9 NC_005887.1 + 38604 0.73 0.420723
Target:  5'- aGCGCgAUGUAGcGCuuCgGCCAGUUCg -3'
miRNA:   3'- gCGUG-UACGUCaUGuuGgCGGUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 3586 0.72 0.450241
Target:  5'- aCGCACGUGCAGUgggagcucacguuGCGccagGCCGCgCAGcgCu -3'
miRNA:   3'- -GCGUGUACGUCA-------------UGU----UGGCG-GUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 29751 0.72 0.472312
Target:  5'- uGCGCGUGCAGcugccaaGCAAgCGCCAGc-- -3'
miRNA:   3'- gCGUGUACGUCa------UGUUgGCGGUCaag -5'
28141 5' -51.9 NC_005887.1 + 6831 0.71 0.504754
Target:  5'- aGUGCGUGCGGUAaccuuccaucCGACCGCC-GUUg -3'
miRNA:   3'- gCGUGUACGUCAU----------GUUGGCGGuCAAg -5'
28141 5' -51.9 NC_005887.1 + 16372 0.71 0.514675
Target:  5'- uGCACcagaagugcgucaAUGCAGUcgagACGGCCGCCGGc-- -3'
miRNA:   3'- gCGUG-------------UACGUCA----UGUUGGCGGUCaag -5'
28141 5' -51.9 NC_005887.1 + 37471 0.71 0.515782
Target:  5'- gCGUGCAgGCAGUcGCGACCGCgCAGcgCc -3'
miRNA:   3'- -GCGUGUaCGUCA-UGUUGGCG-GUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 3850 0.7 0.538119
Target:  5'- uGCACgAUGCGGUcGCGGCCcucgucgaGCCAGUa- -3'
miRNA:   3'- gCGUG-UACGUCA-UGUUGG--------CGGUCAag -5'
28141 5' -51.9 NC_005887.1 + 36576 0.7 0.560779
Target:  5'- cCGCcCGaugcUGCGGU-CGACCGCaCGGUUCc -3'
miRNA:   3'- -GCGuGU----ACGUCAuGUUGGCG-GUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 5483 0.7 0.583693
Target:  5'- uCGCGCcggucgcUGCGGcGCcgcCCGCCGGUUCa -3'
miRNA:   3'- -GCGUGu------ACGUCaUGuu-GGCGGUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 30566 0.69 0.592913
Target:  5'- gGCugAUGCAGUuuugcggugcgcaacGCAcgggccgcgucgcgcACCGCCuGUUCc -3'
miRNA:   3'- gCGugUACGUCA---------------UGU---------------UGGCGGuCAAG- -5'
28141 5' -51.9 NC_005887.1 + 3736 0.69 0.595222
Target:  5'- cCGCGCAaGCuGgACGGCCGCaacaugCAGUUCg -3'
miRNA:   3'- -GCGUGUaCGuCaUGUUGGCG------GUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 25089 0.69 0.618374
Target:  5'- gCGCuACcgGCuGgccgGCGGCCGCCGGcgCg -3'
miRNA:   3'- -GCG-UGuaCGuCa---UGUUGGCGGUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 15320 0.69 0.629976
Target:  5'- cCGCGCA-GCAcUGCGGCUGCCuGcUUCg -3'
miRNA:   3'- -GCGUGUaCGUcAUGUUGGCGGuC-AAG- -5'
28141 5' -51.9 NC_005887.1 + 39605 0.69 0.641579
Target:  5'- uCGCGCGgauUGgGGUACAgaGCCggcGCCAGUUg -3'
miRNA:   3'- -GCGUGU---ACgUCAUGU--UGG---CGGUCAAg -5'
28141 5' -51.9 NC_005887.1 + 7362 0.68 0.653174
Target:  5'- uCGCGC-UGCAGaccgACGACaaCGCCGcGUUCa -3'
miRNA:   3'- -GCGUGuACGUCa---UGUUG--GCGGU-CAAG- -5'
28141 5' -51.9 NC_005887.1 + 14410 0.68 0.664746
Target:  5'- gGCACGcUGCuucACGAUCGCCGcGUUCa -3'
miRNA:   3'- gCGUGU-ACGucaUGUUGGCGGU-CAAG- -5'
28141 5' -51.9 NC_005887.1 + 25015 0.68 0.664746
Target:  5'- uCGCGCcgGCGGccgcCGGCCaGCCGGUa- -3'
miRNA:   3'- -GCGUGuaCGUCau--GUUGG-CGGUCAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.