miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 5' -51.9 NC_005887.1 + 28213 0.66 0.807351
Target:  5'- cCGCGCGUcucgGCGGUuuugaGCAGCgCGCgCAGcUUCg -3'
miRNA:   3'- -GCGUGUA----CGUCA-----UGUUG-GCG-GUC-AAG- -5'
28141 5' -51.9 NC_005887.1 + 34922 0.67 0.755021
Target:  5'- uCGCGCuGUGCGGaacuUGCcgUCGCCGGcUUCg -3'
miRNA:   3'- -GCGUG-UACGUC----AUGuuGGCGGUC-AAG- -5'
28141 5' -51.9 NC_005887.1 + 25627 0.67 0.765819
Target:  5'- uCGCACucaAUGCugauGUGCAgguugagcuucACCGCCAGc-- -3'
miRNA:   3'- -GCGUG---UACGu---CAUGU-----------UGGCGGUCaag -5'
28141 5' -51.9 NC_005887.1 + 3798 0.67 0.765819
Target:  5'- cCGCAuCGUGCAGaACAGCgGCU--UUCg -3'
miRNA:   3'- -GCGU-GUACGUCaUGUUGgCGGucAAG- -5'
28141 5' -51.9 NC_005887.1 + 40578 0.67 0.765819
Target:  5'- gCGCGCucgaGCaAGUACAACC-CgCGGUUCc -3'
miRNA:   3'- -GCGUGua--CG-UCAUGUUGGcG-GUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 30809 0.66 0.786943
Target:  5'- gGCGC--GCAccGCGGCCucgGCCAGUUCg -3'
miRNA:   3'- gCGUGuaCGUcaUGUUGG---CGGUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 457 0.66 0.807351
Target:  5'- gGCGCGUGUGGUGCGggcaugagcaagcugACCGCaaagcagcagcuGUUCg -3'
miRNA:   3'- gCGUGUACGUCAUGU---------------UGGCGgu----------CAAG- -5'
28141 5' -51.9 NC_005887.1 + 40953 0.66 0.807351
Target:  5'- aGCGCAUGCu---CGACCGCUucGGcgCg -3'
miRNA:   3'- gCGUGUACGucauGUUGGCGG--UCaaG- -5'
28141 5' -51.9 NC_005887.1 + 11812 0.66 0.807351
Target:  5'- uCGUACGcuaagGCAG-GCGGCgGCCuGUUCu -3'
miRNA:   3'- -GCGUGUa----CGUCaUGUUGgCGGuCAAG- -5'
28141 5' -51.9 NC_005887.1 + 14944 0.67 0.721845
Target:  5'- cCGCGCGcUGCcGUACGACgCGCCGc--- -3'
miRNA:   3'- -GCGUGU-ACGuCAUGUUG-GCGGUcaag -5'
28141 5' -51.9 NC_005887.1 + 5183 0.68 0.71057
Target:  5'- aCGCGuCGaGguGUGCAGCaagaGCCAGUa- -3'
miRNA:   3'- -GCGU-GUaCguCAUGUUGg---CGGUCAag -5'
28141 5' -51.9 NC_005887.1 + 41287 0.68 0.687777
Target:  5'- gCGCACGggcGCGcUGCuGCCGCCGGg-- -3'
miRNA:   3'- -GCGUGUa--CGUcAUGuUGGCGGUCaag -5'
28141 5' -51.9 NC_005887.1 + 32673 0.74 0.340485
Target:  5'- uCGCGCGUGCGcgcuucggcaaccgcGUACAgcgcacggauaGCCGCgCGGUUCa -3'
miRNA:   3'- -GCGUGUACGU---------------CAUGU-----------UGGCG-GUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 38604 0.73 0.420723
Target:  5'- aGCGCgAUGUAGcGCuuCgGCCAGUUCg -3'
miRNA:   3'- gCGUG-UACGUCaUGuuGgCGGUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 3586 0.72 0.450241
Target:  5'- aCGCACGUGCAGUgggagcucacguuGCGccagGCCGCgCAGcgCu -3'
miRNA:   3'- -GCGUGUACGUCA-------------UGU----UGGCG-GUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 16372 0.71 0.514675
Target:  5'- uGCACcagaagugcgucaAUGCAGUcgagACGGCCGCCGGc-- -3'
miRNA:   3'- gCGUG-------------UACGUCA----UGUUGGCGGUCaag -5'
28141 5' -51.9 NC_005887.1 + 3736 0.69 0.595222
Target:  5'- cCGCGCAaGCuGgACGGCCGCaacaugCAGUUCg -3'
miRNA:   3'- -GCGUGUaCGuCaUGUUGGCG------GUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 7362 0.68 0.653174
Target:  5'- uCGCGC-UGCAGaccgACGACaaCGCCGcGUUCa -3'
miRNA:   3'- -GCGUGuACGUCa---UGUUG--GCGGU-CAAG- -5'
28141 5' -51.9 NC_005887.1 + 25015 0.68 0.664746
Target:  5'- uCGCGCcgGCGGccgcCGGCCaGCCGGUa- -3'
miRNA:   3'- -GCGUGuaCGUCau--GUUGG-CGGUCAag -5'
28141 5' -51.9 NC_005887.1 + 14634 0.68 0.665902
Target:  5'- gCGCGCucacggcagccggcGCGGUGCuGCCcgucGCCGGUUCg -3'
miRNA:   3'- -GCGUGua------------CGUCAUGuUGG----CGGUCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.