miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 5' -58.4 NC_005887.1 + 10421 0.73 0.17584
Target:  5'- gGCGUUACGGUCgCGGugcugaCCGACgGCGCAg -3'
miRNA:   3'- -CGCGAUGCCGG-GCUua----GGCUG-CGCGU- -5'
28142 5' -58.4 NC_005887.1 + 13626 0.73 0.180625
Target:  5'- gGCGCgcgGCGGCcgcacucagCCGAGcagcaCCGACGUGCAg -3'
miRNA:   3'- -CGCGa--UGCCG---------GGCUUa----GGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 19930 0.72 0.223202
Target:  5'- aCGCUGCcGCCCGGugucagccUCCGugGCGUu -3'
miRNA:   3'- cGCGAUGcCGGGCUu-------AGGCugCGCGu -5'
28142 5' -58.4 NC_005887.1 + 23656 0.72 0.223202
Target:  5'- cGCGCUGauuGUCgGAgauaAUCCGGCGCGCGc -3'
miRNA:   3'- -CGCGAUgc-CGGgCU----UAGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 40921 0.71 0.259839
Target:  5'- cGCGCgcgGCGGCUucgccggUGGAUCCGAC-UGCAc -3'
miRNA:   3'- -CGCGa--UGCCGG-------GCUUAGGCUGcGCGU- -5'
28142 5' -58.4 NC_005887.1 + 4679 0.71 0.253948
Target:  5'- uGCGCagACGGCgaGggUCUGAUGgGCGc -3'
miRNA:   3'- -CGCGa-UGCCGggCuuAGGCUGCgCGU- -5'
28142 5' -58.4 NC_005887.1 + 15742 0.71 0.234495
Target:  5'- cGCGCgGCGGUgagcuggUCGAGcUCGGCGCGCAu -3'
miRNA:   3'- -CGCGaUGCCG-------GGCUUaGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 38216 0.71 0.253948
Target:  5'- cGCGCU-CGGCCUGAuGUCCGGCauuuucaucGcCGCGg -3'
miRNA:   3'- -CGCGAuGCCGGGCU-UAGGCUG---------C-GCGU- -5'
28142 5' -58.4 NC_005887.1 + 31989 0.71 0.229087
Target:  5'- uGCGCaaccACGGCCCGGAUCUuGCaGCaGCAu -3'
miRNA:   3'- -CGCGa---UGCCGGGCUUAGGcUG-CG-CGU- -5'
28142 5' -58.4 NC_005887.1 + 20857 0.71 0.257863
Target:  5'- uGCGCgguaacgguguugGCGGCCUGAAUgauaguggcgCCGGCGUGUc -3'
miRNA:   3'- -CGCGa------------UGCCGGGCUUA----------GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 3802 0.7 0.295337
Target:  5'- aUGUUGCGGCCguccagcuugcgCGGAUCgcgguCGGCGCGCGg -3'
miRNA:   3'- cGCGAUGCCGG------------GCUUAG-----GCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 14534 0.7 0.274017
Target:  5'- uGCGCga-GGCCCGAca-CGACGCcuuGCAc -3'
miRNA:   3'- -CGCGaugCCGGGCUuagGCUGCG---CGU- -5'
28142 5' -58.4 NC_005887.1 + 32822 0.7 0.274017
Target:  5'- -gGCUGCauGGCgCGcg-CCGGCGCGCAc -3'
miRNA:   3'- cgCGAUG--CCGgGCuuaGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 12195 0.7 0.302725
Target:  5'- cGCGCgacgGCGGCCUGcucGUCCuGGCGCuucuGCGc -3'
miRNA:   3'- -CGCGa---UGCCGGGCu--UAGG-CUGCG----CGU- -5'
28142 5' -58.4 NC_005887.1 + 41719 0.7 0.26719
Target:  5'- gGCGaugacggGCGGCgauCCGAucCCGGCGCGCGg -3'
miRNA:   3'- -CGCga-----UGCCG---GGCUuaGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 16994 0.7 0.302725
Target:  5'- -gGCUACGuGCC--GAUCCGccACGCGCAg -3'
miRNA:   3'- cgCGAUGC-CGGgcUUAGGC--UGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 17026 0.7 0.295337
Target:  5'- gGUGCU-UGGCaaCGGAUCgGAUGCGCAg -3'
miRNA:   3'- -CGCGAuGCCGg-GCUUAGgCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 3995 0.7 0.28809
Target:  5'- cGUGCUugAUGGCuUCGAccugcguUCCGGCGCGCu -3'
miRNA:   3'- -CGCGA--UGCCG-GGCUu------AGGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 4272 0.7 0.28809
Target:  5'- cUGCU-CGGCCCGAugaUCG-CGCGCGa -3'
miRNA:   3'- cGCGAuGCCGGGCUua-GGCuGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 15923 0.7 0.28809
Target:  5'- uGCGUUccgcGCGGgCCGGAaUCGAUGCGCc -3'
miRNA:   3'- -CGCGA----UGCCgGGCUUaGGCUGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.