Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 1912 | 0.73 | 0.190543 |
Target: 5'- -----gUGGUCCGAGUCCGGCGCGUu -3' miRNA: 3'- cgcgauGCCGGGCUUAGGCUGCGCGu -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 14681 | 0.73 | 0.190543 |
Target: 5'- aGCGCgcccucgACGGCgCCGAcggCCGuACGCGUAc -3' miRNA: 3'- -CGCGa------UGCCG-GGCUua-GGC-UGCGCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 23656 | 0.72 | 0.223202 |
Target: 5'- cGCGCUGauuGUCgGAgauaAUCCGGCGCGCGc -3' miRNA: 3'- -CGCGAUgc-CGGgCU----UAGGCUGCGCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 19930 | 0.72 | 0.223202 |
Target: 5'- aCGCUGCcGCCCGGugucagccUCCGugGCGUu -3' miRNA: 3'- cGCGAUGcCGGGCUu-------AGGCugCGCGu -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 31989 | 0.71 | 0.229087 |
Target: 5'- uGCGCaaccACGGCCCGGAUCUuGCaGCaGCAu -3' miRNA: 3'- -CGCGa---UGCCGGGCUUAGGcUG-CG-CGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 15742 | 0.71 | 0.234495 |
Target: 5'- cGCGCgGCGGUgagcuggUCGAGcUCGGCGCGCAu -3' miRNA: 3'- -CGCGaUGCCG-------GGCUUaGGCUGCGCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 38216 | 0.71 | 0.253948 |
Target: 5'- cGCGCU-CGGCCUGAuGUCCGGCauuuucaucGcCGCGg -3' miRNA: 3'- -CGCGAuGCCGGGCU-UAGGCUG---------C-GCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 4679 | 0.71 | 0.253948 |
Target: 5'- uGCGCagACGGCgaGggUCUGAUGgGCGc -3' miRNA: 3'- -CGCGa-UGCCGggCuuAGGCUGCgCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 20857 | 0.71 | 0.257863 |
Target: 5'- uGCGCgguaacgguguugGCGGCCUGAAUgauaguggcgCCGGCGUGUc -3' miRNA: 3'- -CGCGa------------UGCCGGGCUUA----------GGCUGCGCGu -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 40921 | 0.71 | 0.259839 |
Target: 5'- cGCGCgcgGCGGCUucgccggUGGAUCCGAC-UGCAc -3' miRNA: 3'- -CGCGa--UGCCGG-------GCUUAGGCUGcGCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 41719 | 0.7 | 0.26719 |
Target: 5'- gGCGaugacggGCGGCgauCCGAucCCGGCGCGCGg -3' miRNA: 3'- -CGCga-----UGCCG---GGCUuaGGCUGCGCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 32822 | 0.7 | 0.274017 |
Target: 5'- -gGCUGCauGGCgCGcg-CCGGCGCGCAc -3' miRNA: 3'- cgCGAUG--CCGgGCuuaGGCUGCGCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 611 | 0.7 | 0.274017 |
Target: 5'- cGCGCUguauccggcGCGGCgCGcggcggCCGACGCGUu -3' miRNA: 3'- -CGCGA---------UGCCGgGCuua---GGCUGCGCGu -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 35409 | 0.7 | 0.274017 |
Target: 5'- cGCGC-ACGGCCuucgcccaCGAGUCgaucaggucgagCGACGCGUAg -3' miRNA: 3'- -CGCGaUGCCGG--------GCUUAG------------GCUGCGCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 14534 | 0.7 | 0.274017 |
Target: 5'- uGCGCga-GGCCCGAca-CGACGCcuuGCAc -3' miRNA: 3'- -CGCGaugCCGGGCUuagGCUGCG---CGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 8941 | 0.7 | 0.274017 |
Target: 5'- aGCGCgUACGGCgUCGcGAUCuCGACGgGCGc -3' miRNA: 3'- -CGCG-AUGCCG-GGC-UUAG-GCUGCgCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 40737 | 0.7 | 0.278879 |
Target: 5'- cGCGCcaggugcaggauggUGCGGCCgGugaUCGGCGCGCGc -3' miRNA: 3'- -CGCG--------------AUGCCGGgCuuaGGCUGCGCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 18628 | 0.7 | 0.280983 |
Target: 5'- aGCGCgaucgGCGGCCCGcugcugUCGACGCu-- -3' miRNA: 3'- -CGCGa----UGCCGGGCuua---GGCUGCGcgu -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 30480 | 0.7 | 0.280983 |
Target: 5'- uGCGCgacGCGGCCCG--UgCGuuGCGCAc -3' miRNA: 3'- -CGCGa--UGCCGGGCuuAgGCugCGCGU- -5' |
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28142 | 5' | -58.4 | NC_005887.1 | + | 42001 | 0.7 | 0.280983 |
Target: 5'- gGC-CUGCGGCCCacGUCgagugucgccgCGGCGCGCGa -3' miRNA: 3'- -CGcGAUGCCGGGcuUAG-----------GCUGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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