miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 5' -58.4 NC_005887.1 + 12490 0.66 0.459381
Target:  5'- cGCGCUgaucgauucaGCGGCgCUGGAUCCgcaGACGaagGCGa -3'
miRNA:   3'- -CGCGA----------UGCCG-GGCUUAGG---CUGCg--CGU- -5'
28142 5' -58.4 NC_005887.1 + 12520 0.66 0.459381
Target:  5'- cGCGCgucgaaccgUACaGGCUCGggUCCaucgcgaucGCGCGCGc -3'
miRNA:   3'- -CGCG---------AUG-CCGGGCuuAGGc--------UGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 15879 0.66 0.459381
Target:  5'- gGCGCaccaGCaGCUCGGugcgCuCGACGCGCAg -3'
miRNA:   3'- -CGCGa---UGcCGGGCUua--G-GCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 40145 0.67 0.449574
Target:  5'- cGCGCUGCGcGCCgCGcucgCCG-CGUGUg -3'
miRNA:   3'- -CGCGAUGC-CGG-GCuua-GGCuGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 38069 0.67 0.449574
Target:  5'- -aGCUACuGGCCCaaga-CGAUGCGCu -3'
miRNA:   3'- cgCGAUG-CCGGGcuuagGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 28452 0.67 0.439884
Target:  5'- uGCGCgugACGacaGCCgCGAAgccgUCGACGCGUu -3'
miRNA:   3'- -CGCGa--UGC---CGG-GCUUa---GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 1462 0.67 0.439884
Target:  5'- uGUGCgagcAgGaGCCCGAcgCCGACgGCGUg -3'
miRNA:   3'- -CGCGa---UgC-CGGGCUuaGGCUG-CGCGu -5'
28142 5' -58.4 NC_005887.1 + 14653 0.67 0.439884
Target:  5'- cGCGgUGCuGCCCGucgccGGUUCGACGCuGCc -3'
miRNA:   3'- -CGCgAUGcCGGGC-----UUAGGCUGCG-CGu -5'
28142 5' -58.4 NC_005887.1 + 3010 0.67 0.439884
Target:  5'- cGCGcCUGCGGCCagcg-CCG-CGgGCAa -3'
miRNA:   3'- -CGC-GAUGCCGGgcuuaGGCuGCgCGU- -5'
28142 5' -58.4 NC_005887.1 + 8723 0.67 0.430313
Target:  5'- aGCGCUucgucGCGGCCacgaaGGAUUCGACGaaaCAg -3'
miRNA:   3'- -CGCGA-----UGCCGGg----CUUAGGCUGCgc-GU- -5'
28142 5' -58.4 NC_005887.1 + 36515 0.67 0.420866
Target:  5'- cCGCUGCGGgcuggCCGAAgggcaagaagCCGGcCGCGCGg -3'
miRNA:   3'- cGCGAUGCCg----GGCUUa---------GGCU-GCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 14287 0.67 0.420866
Target:  5'- cGCGCcgaacagcGCGGCgCCGcccuGUCCGAggcCGCGCc -3'
miRNA:   3'- -CGCGa-------UGCCG-GGCu---UAGGCU---GCGCGu -5'
28142 5' -58.4 NC_005887.1 + 14606 0.67 0.420866
Target:  5'- aCGCgUACGGCCguCGGcgCCGucgaggGCGCGCu -3'
miRNA:   3'- cGCG-AUGCCGG--GCUuaGGC------UGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 24237 0.67 0.420866
Target:  5'- uGCGCUGCuGGCCaCGug-CCGGCaGCaGCc -3'
miRNA:   3'- -CGCGAUG-CCGG-GCuuaGGCUG-CG-CGu -5'
28142 5' -58.4 NC_005887.1 + 40556 0.67 0.420866
Target:  5'- gGCGCU-CGcGCaCGAGUucUCGGCGCGCu -3'
miRNA:   3'- -CGCGAuGC-CGgGCUUA--GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 14006 0.67 0.418992
Target:  5'- uGCGCcGCGcGCCUccgcaaccgCCGGCGCGCc -3'
miRNA:   3'- -CGCGaUGC-CGGGcuua-----GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 30811 0.67 0.415258
Target:  5'- cGCGCaccGCGGCCuCGGccaGUUCGAcguccaucugcaugcCGCGCAu -3'
miRNA:   3'- -CGCGa--UGCCGG-GCU---UAGGCU---------------GCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 41923 0.67 0.411545
Target:  5'- cGUGCUgaGCGGCUCGcagcuGAgcugcCCGGCGUGCu -3'
miRNA:   3'- -CGCGA--UGCCGGGC-----UUa----GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 14399 0.67 0.408774
Target:  5'- cGCGCgUACGaccuGUCCGAcacguucaagccggAcCCGACGCGCGc -3'
miRNA:   3'- -CGCG-AUGC----CGGGCU--------------UaGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 1061 0.67 0.402353
Target:  5'- cGCGCgcacgGCGGCCgGcAAUuuG-CGCGUg -3'
miRNA:   3'- -CGCGa----UGCCGGgC-UUAggCuGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.