miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 5' -58.4 NC_005887.1 + 35648 0.67 0.401441
Target:  5'- aGCGgUGCGaGCUCGAcgCUGucgacauacagcaGCGCGCGa -3'
miRNA:   3'- -CGCgAUGC-CGGGCUuaGGC-------------UGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 41000 0.68 0.393293
Target:  5'- uGCGCU-CGGCguugCCGAAcUCGguGCGCGCGc -3'
miRNA:   3'- -CGCGAuGCCG----GGCUUaGGC--UGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 6824 0.68 0.393293
Target:  5'- gGCGCUACguGGCgCGggUCugcaacauCGACGUGUc -3'
miRNA:   3'- -CGCGAUG--CCGgGCuuAG--------GCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 28590 0.68 0.392394
Target:  5'- cGCGCgugaGCGuGCCUGAccgcAUcgucaucuucccgCCGGCGCGCGu -3'
miRNA:   3'- -CGCGa---UGC-CGGGCU----UA-------------GGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 18464 0.68 0.379075
Target:  5'- gGCGCcGCGGCguaggccaucggguuCgCGAGcgCCGGCGCGCc -3'
miRNA:   3'- -CGCGaUGCCG---------------G-GCUUa-GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 32749 0.68 0.375574
Target:  5'- uGCGCUguacGCGGUugCCGAAgCgCGcACGCGCGa -3'
miRNA:   3'- -CGCGA----UGCCG--GGCUUaG-GC-UGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 832 0.68 0.375574
Target:  5'- cGCGCgaucGCGGCCgCGAAgaaagCCaaggugcccgugGACGCGUg -3'
miRNA:   3'- -CGCGa---UGCCGG-GCUUa----GG------------CUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 18109 0.68 0.375574
Target:  5'- uCGCccaaucguCGGCCgucAGUCCGGCGCGCGu -3'
miRNA:   3'- cGCGau------GCCGGgc-UUAGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 5474 0.68 0.375574
Target:  5'- uCGCUGCGGCgCCGcccgCCGGuucaccgguCGCGCu -3'
miRNA:   3'- cGCGAUGCCG-GGCuua-GGCU---------GCGCGu -5'
28142 5' -58.4 NC_005887.1 + 14205 0.68 0.372096
Target:  5'- gGCGCggccucggacaggGCGGCgCCGcgcuGUUCGGCGCgGCAu -3'
miRNA:   3'- -CGCGa------------UGCCG-GGCu---UAGGCUGCG-CGU- -5'
28142 5' -58.4 NC_005887.1 + 32746 0.68 0.366919
Target:  5'- gGCGCUcGCGuGCgCG---CCGGCGCGCGc -3'
miRNA:   3'- -CGCGA-UGC-CGgGCuuaGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 28893 0.68 0.366919
Target:  5'- aGCGaccgucgACGGCUaCGAAUUgGAUGCGCGc -3'
miRNA:   3'- -CGCga-----UGCCGG-GCUUAGgCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 5567 0.68 0.366919
Target:  5'- gGUGCUGCGGCCgGugcugcggCCGGugcUGCGCc -3'
miRNA:   3'- -CGCGAUGCCGGgCuua-----GGCU---GCGCGu -5'
28142 5' -58.4 NC_005887.1 + 32871 0.68 0.358403
Target:  5'- cCGCUGuuCGuGCCCGuGAagCGGCGCGCGc -3'
miRNA:   3'- cGCGAU--GC-CGGGC-UUagGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 7341 0.68 0.358403
Target:  5'- aGCGg-GCGGCCgGGG-CCGAUGuCGCGg -3'
miRNA:   3'- -CGCgaUGCCGGgCUUaGGCUGC-GCGU- -5'
28142 5' -58.4 NC_005887.1 + 25090 0.68 0.358403
Target:  5'- uGCGCUAcCGGCuggCCGGcggccgCCGGCGCGa- -3'
miRNA:   3'- -CGCGAU-GCCG---GGCUua----GGCUGCGCgu -5'
28142 5' -58.4 NC_005887.1 + 8691 0.68 0.358403
Target:  5'- gGUGC-AgGGCCCGGcgAUCCGcCGCgGCGg -3'
miRNA:   3'- -CGCGaUgCCGGGCU--UAGGCuGCG-CGU- -5'
28142 5' -58.4 NC_005887.1 + 4621 0.69 0.350026
Target:  5'- uCGCcGCGGCgCCGGuggccgCCGGCGCGa- -3'
miRNA:   3'- cGCGaUGCCG-GGCUua----GGCUGCGCgu -5'
28142 5' -58.4 NC_005887.1 + 25017 0.69 0.341789
Target:  5'- cGCGCgcaagGCGGCCCGcgcgcaCCG-CGuCGCGa -3'
miRNA:   3'- -CGCGa----UGCCGGGCuua---GGCuGC-GCGU- -5'
28142 5' -58.4 NC_005887.1 + 21990 0.69 0.336107
Target:  5'- cGCGCUcgucgggugcguuaaGCGuCCCGAGUCUuucaauuGGCGCGUAg -3'
miRNA:   3'- -CGCGA---------------UGCcGGGCUUAGG-------CUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.