miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 5' -58.4 NC_005887.1 + 17448 1.1 0.000309
Target:  5'- aGCGCUACGGCCCGAAUCCGACGCGCAa -3'
miRNA:   3'- -CGCGAUGCCGGGCUUAGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 13560 0.81 0.04683
Target:  5'- uGCGCUGCcGCCCGAGcaggCCGACGaCGCGa -3'
miRNA:   3'- -CGCGAUGcCGGGCUUa---GGCUGC-GCGU- -5'
28142 5' -58.4 NC_005887.1 + 13971 0.79 0.070079
Target:  5'- cCGCgUACGuGCCaCGAAUgCCGACGCGCAc -3'
miRNA:   3'- cGCG-AUGC-CGG-GCUUA-GGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 9202 0.78 0.085543
Target:  5'- aCGUcggACGGCCUGAAUaCCGAUGCGCu -3'
miRNA:   3'- cGCGa--UGCCGGGCUUA-GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 34580 0.77 0.095788
Target:  5'- cCGCUGCGGCCUGA--UgGGCGUGCAg -3'
miRNA:   3'- cGCGAUGCCGGGCUuaGgCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 2454 0.76 0.107186
Target:  5'- uGCGCUACGGCgCCGucgaCGAgGCGCu -3'
miRNA:   3'- -CGCGAUGCCG-GGCuuagGCUgCGCGu -5'
28142 5' -58.4 NC_005887.1 + 22143 0.75 0.122884
Target:  5'- cGCGCU-CGGCUucaucggCGAAgggCUGACGCGCAa -3'
miRNA:   3'- -CGCGAuGCCGG-------GCUUa--GGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 12437 0.75 0.137633
Target:  5'- cGCGCgaucgcgAUGGaCCCGAgccuguacgGUUCGACGCGCGc -3'
miRNA:   3'- -CGCGa------UGCC-GGGCU---------UAGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 5144 0.75 0.14147
Target:  5'- cGCGCU---GCCCGAcgUCGGCGCGCc -3'
miRNA:   3'- -CGCGAugcCGGGCUuaGGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 6611 0.74 0.145404
Target:  5'- aCGCUgGCGGCaCCGGAUCCGACaaCGCc -3'
miRNA:   3'- cGCGA-UGCCG-GGCUUAGGCUGc-GCGu -5'
28142 5' -58.4 NC_005887.1 + 24003 0.74 0.149437
Target:  5'- uGCGCagACGGCCgCGAggCCGACGUcaucGCGa -3'
miRNA:   3'- -CGCGa-UGCCGG-GCUuaGGCUGCG----CGU- -5'
28142 5' -58.4 NC_005887.1 + 22773 0.74 0.153573
Target:  5'- cGUGCUcguUGGCUCGAcgCCGGCGCGg- -3'
miRNA:   3'- -CGCGAu--GCCGGGCUuaGGCUGCGCgu -5'
28142 5' -58.4 NC_005887.1 + 35213 0.74 0.153573
Target:  5'- aGCGUgACGGCCgCccGUCCGugGCGCc -3'
miRNA:   3'- -CGCGaUGCCGG-GcuUAGGCugCGCGu -5'
28142 5' -58.4 NC_005887.1 + 7531 0.74 0.162156
Target:  5'- aGCGCUcguucgcgaACGGCaugCCG-AUCaCGACGCGCAc -3'
miRNA:   3'- -CGCGA---------UGCCG---GGCuUAG-GCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 3268 0.74 0.162156
Target:  5'- aGCGCUcGCGGCCCuucucgcuGUCCGG-GCGCGg -3'
miRNA:   3'- -CGCGA-UGCCGGGcu------UAGGCUgCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 16468 0.73 0.175368
Target:  5'- uGCGCUcgaccgcGCGGCa-GGAUCCGGCGgGCu -3'
miRNA:   3'- -CGCGA-------UGCCGggCUUAGGCUGCgCGu -5'
28142 5' -58.4 NC_005887.1 + 10421 0.73 0.17584
Target:  5'- gGCGUUACGGUCgCGGugcugaCCGACgGCGCAg -3'
miRNA:   3'- -CGCGAUGCCGG-GCUua----GGCUG-CGCGU- -5'
28142 5' -58.4 NC_005887.1 + 28048 0.73 0.180625
Target:  5'- aCGCgauuCGGCCCGAG-CCGGCG-GCGg -3'
miRNA:   3'- cGCGau--GCCGGGCUUaGGCUGCgCGU- -5'
28142 5' -58.4 NC_005887.1 + 13626 0.73 0.180625
Target:  5'- gGCGCgcgGCGGCcgcacucagCCGAGcagcaCCGACGUGCAg -3'
miRNA:   3'- -CGCGa--UGCCG---------GGCUUa----GGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 29854 0.73 0.185525
Target:  5'- -aGCUACuGGCCCGAGcugCgCGACGCgGCGa -3'
miRNA:   3'- cgCGAUG-CCGGGCUUa--G-GCUGCG-CGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.