Results 1 - 20 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 17448 | 1.1 | 0.000309 |
Target: 5'- aGCGCUACGGCCCGAAUCCGACGCGCAa -3' miRNA: 3'- -CGCGAUGCCGGGCUUAGGCUGCGCGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 13560 | 0.81 | 0.04683 |
Target: 5'- uGCGCUGCcGCCCGAGcaggCCGACGaCGCGa -3' miRNA: 3'- -CGCGAUGcCGGGCUUa---GGCUGC-GCGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 13971 | 0.79 | 0.070079 |
Target: 5'- cCGCgUACGuGCCaCGAAUgCCGACGCGCAc -3' miRNA: 3'- cGCG-AUGC-CGG-GCUUA-GGCUGCGCGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 9202 | 0.78 | 0.085543 |
Target: 5'- aCGUcggACGGCCUGAAUaCCGAUGCGCu -3' miRNA: 3'- cGCGa--UGCCGGGCUUA-GGCUGCGCGu -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 34580 | 0.77 | 0.095788 |
Target: 5'- cCGCUGCGGCCUGA--UgGGCGUGCAg -3' miRNA: 3'- cGCGAUGCCGGGCUuaGgCUGCGCGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 2454 | 0.76 | 0.107186 |
Target: 5'- uGCGCUACGGCgCCGucgaCGAgGCGCu -3' miRNA: 3'- -CGCGAUGCCG-GGCuuagGCUgCGCGu -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 22143 | 0.75 | 0.122884 |
Target: 5'- cGCGCU-CGGCUucaucggCGAAgggCUGACGCGCAa -3' miRNA: 3'- -CGCGAuGCCGG-------GCUUa--GGCUGCGCGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 12437 | 0.75 | 0.137633 |
Target: 5'- cGCGCgaucgcgAUGGaCCCGAgccuguacgGUUCGACGCGCGc -3' miRNA: 3'- -CGCGa------UGCC-GGGCU---------UAGGCUGCGCGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 5144 | 0.75 | 0.14147 |
Target: 5'- cGCGCU---GCCCGAcgUCGGCGCGCc -3' miRNA: 3'- -CGCGAugcCGGGCUuaGGCUGCGCGu -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 6611 | 0.74 | 0.145404 |
Target: 5'- aCGCUgGCGGCaCCGGAUCCGACaaCGCc -3' miRNA: 3'- cGCGA-UGCCG-GGCUUAGGCUGc-GCGu -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 24003 | 0.74 | 0.149437 |
Target: 5'- uGCGCagACGGCCgCGAggCCGACGUcaucGCGa -3' miRNA: 3'- -CGCGa-UGCCGG-GCUuaGGCUGCG----CGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 22773 | 0.74 | 0.153573 |
Target: 5'- cGUGCUcguUGGCUCGAcgCCGGCGCGg- -3' miRNA: 3'- -CGCGAu--GCCGGGCUuaGGCUGCGCgu -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 35213 | 0.74 | 0.153573 |
Target: 5'- aGCGUgACGGCCgCccGUCCGugGCGCc -3' miRNA: 3'- -CGCGaUGCCGG-GcuUAGGCugCGCGu -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 7531 | 0.74 | 0.162156 |
Target: 5'- aGCGCUcguucgcgaACGGCaugCCG-AUCaCGACGCGCAc -3' miRNA: 3'- -CGCGA---------UGCCG---GGCuUAG-GCUGCGCGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 3268 | 0.74 | 0.162156 |
Target: 5'- aGCGCUcGCGGCCCuucucgcuGUCCGG-GCGCGg -3' miRNA: 3'- -CGCGA-UGCCGGGcu------UAGGCUgCGCGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 16468 | 0.73 | 0.175368 |
Target: 5'- uGCGCUcgaccgcGCGGCa-GGAUCCGGCGgGCu -3' miRNA: 3'- -CGCGA-------UGCCGggCUUAGGCUGCgCGu -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 10421 | 0.73 | 0.17584 |
Target: 5'- gGCGUUACGGUCgCGGugcugaCCGACgGCGCAg -3' miRNA: 3'- -CGCGAUGCCGG-GCUua----GGCUG-CGCGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 28048 | 0.73 | 0.180625 |
Target: 5'- aCGCgauuCGGCCCGAG-CCGGCG-GCGg -3' miRNA: 3'- cGCGau--GCCGGGCUUaGGCUGCgCGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 13626 | 0.73 | 0.180625 |
Target: 5'- gGCGCgcgGCGGCcgcacucagCCGAGcagcaCCGACGUGCAg -3' miRNA: 3'- -CGCGa--UGCCG---------GGCUUa----GGCUGCGCGU- -5' |
|||||||
28142 | 5' | -58.4 | NC_005887.1 | + | 29854 | 0.73 | 0.185525 |
Target: 5'- -aGCUACuGGCCCGAGcugCgCGACGCgGCGa -3' miRNA: 3'- cgCGAUG-CCGGGCUUa--G-GCUGCG-CGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home