miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 5' -58.4 NC_005887.1 + 15923 0.7 0.28809
Target:  5'- uGCGUUccgcGCGGgCCGGAaUCGAUGCGCc -3'
miRNA:   3'- -CGCGA----UGCCgGGCUUaGGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 23656 0.72 0.223202
Target:  5'- cGCGCUGauuGUCgGAgauaAUCCGGCGCGCGc -3'
miRNA:   3'- -CGCGAUgc-CGGgCU----UAGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 4679 0.71 0.253948
Target:  5'- uGCGCagACGGCgaGggUCUGAUGgGCGc -3'
miRNA:   3'- -CGCGa-UGCCGggCuuAGGCUGCgCGU- -5'
28142 5' -58.4 NC_005887.1 + 20857 0.71 0.257863
Target:  5'- uGCGCgguaacgguguugGCGGCCUGAAUgauaguggcgCCGGCGUGUc -3'
miRNA:   3'- -CGCGa------------UGCCGGGCUUA----------GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 41719 0.7 0.26719
Target:  5'- gGCGaugacggGCGGCgauCCGAucCCGGCGCGCGg -3'
miRNA:   3'- -CGCga-----UGCCG---GGCUuaGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 35409 0.7 0.274017
Target:  5'- cGCGC-ACGGCCuucgcccaCGAGUCgaucaggucgagCGACGCGUAg -3'
miRNA:   3'- -CGCGaUGCCGG--------GCUUAG------------GCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 18628 0.7 0.280983
Target:  5'- aGCGCgaucgGCGGCCCGcugcugUCGACGCu-- -3'
miRNA:   3'- -CGCGa----UGCCGGGCuua---GGCUGCGcgu -5'
28142 5' -58.4 NC_005887.1 + 30480 0.7 0.280983
Target:  5'- uGCGCgacGCGGCCCG--UgCGuuGCGCAc -3'
miRNA:   3'- -CGCGa--UGCCGGGCuuAgGCugCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 42001 0.7 0.280983
Target:  5'- gGC-CUGCGGCCCacGUCgagugucgccgCGGCGCGCGa -3'
miRNA:   3'- -CGcGAUGCCGGGcuUAG-----------GCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 19930 0.72 0.223202
Target:  5'- aCGCUGCcGCCCGGugucagccUCCGugGCGUu -3'
miRNA:   3'- cGCGAUGcCGGGCUu-------AGGCugCGCGu -5'
28142 5' -58.4 NC_005887.1 + 13626 0.73 0.180625
Target:  5'- gGCGCgcgGCGGCcgcacucagCCGAGcagcaCCGACGUGCAg -3'
miRNA:   3'- -CGCGa--UGCCG---------GGCUUa----GGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 10421 0.73 0.17584
Target:  5'- gGCGUUACGGUCgCGGugcugaCCGACgGCGCAg -3'
miRNA:   3'- -CGCGAUGCCGG-GCUua----GGCUG-CGCGU- -5'
28142 5' -58.4 NC_005887.1 + 13560 0.81 0.04683
Target:  5'- uGCGCUGCcGCCCGAGcaggCCGACGaCGCGa -3'
miRNA:   3'- -CGCGAUGcCGGGCUUa---GGCUGC-GCGU- -5'
28142 5' -58.4 NC_005887.1 + 2454 0.76 0.107186
Target:  5'- uGCGCUACGGCgCCGucgaCGAgGCGCu -3'
miRNA:   3'- -CGCGAUGCCG-GGCuuagGCUgCGCGu -5'
28142 5' -58.4 NC_005887.1 + 22143 0.75 0.122884
Target:  5'- cGCGCU-CGGCUucaucggCGAAgggCUGACGCGCAa -3'
miRNA:   3'- -CGCGAuGCCGG-------GCUUa--GGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 12437 0.75 0.137633
Target:  5'- cGCGCgaucgcgAUGGaCCCGAgccuguacgGUUCGACGCGCGc -3'
miRNA:   3'- -CGCGa------UGCC-GGGCU---------UAGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 5144 0.75 0.14147
Target:  5'- cGCGCU---GCCCGAcgUCGGCGCGCc -3'
miRNA:   3'- -CGCGAugcCGGGCUuaGGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 6611 0.74 0.145404
Target:  5'- aCGCUgGCGGCaCCGGAUCCGACaaCGCc -3'
miRNA:   3'- cGCGA-UGCCG-GGCUUAGGCUGc-GCGu -5'
28142 5' -58.4 NC_005887.1 + 22773 0.74 0.153573
Target:  5'- cGUGCUcguUGGCUCGAcgCCGGCGCGg- -3'
miRNA:   3'- -CGCGAu--GCCGGGCUuaGGCUGCGCgu -5'
28142 5' -58.4 NC_005887.1 + 16468 0.73 0.175368
Target:  5'- uGCGCUcgaccgcGCGGCa-GGAUCCGGCGgGCu -3'
miRNA:   3'- -CGCGA-------UGCCGggCUUAGGCUGCgCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.