miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 5' -58.4 NC_005887.1 + 437 0.69 0.317925
Target:  5'- uUGCUGC-GCUCGAAcccUCUGGCGCGUg -3'
miRNA:   3'- cGCGAUGcCGGGCUU---AGGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 611 0.7 0.274017
Target:  5'- cGCGCUguauccggcGCGGCgCGcggcggCCGACGCGUu -3'
miRNA:   3'- -CGCGA---------UGCCGgGCuua---GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 832 0.68 0.375574
Target:  5'- cGCGCgaucGCGGCCgCGAAgaaagCCaaggugcccgugGACGCGUg -3'
miRNA:   3'- -CGCGa---UGCCGG-GCUUa----GG------------CUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 1061 0.67 0.402353
Target:  5'- cGCGCgcacgGCGGCCgGcAAUuuG-CGCGUg -3'
miRNA:   3'- -CGCGa----UGCCGGgC-UUAggCuGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 1462 0.67 0.439884
Target:  5'- uGUGCgagcAgGaGCCCGAcgCCGACgGCGUg -3'
miRNA:   3'- -CGCGa---UgC-CGGGCUuaGGCUG-CGCGu -5'
28142 5' -58.4 NC_005887.1 + 1912 0.73 0.190543
Target:  5'- -----gUGGUCCGAGUCCGGCGCGUu -3'
miRNA:   3'- cgcgauGCCGGGCUUAGGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 2173 0.66 0.499692
Target:  5'- -gGaCUuCGGCCUGAcgCCGGC-CGCGg -3'
miRNA:   3'- cgC-GAuGCCGGGCUuaGGCUGcGCGU- -5'
28142 5' -58.4 NC_005887.1 + 2454 0.76 0.107186
Target:  5'- uGCGCUACGGCgCCGucgaCGAgGCGCu -3'
miRNA:   3'- -CGCGAUGCCG-GGCuuagGCUgCGCGu -5'
28142 5' -58.4 NC_005887.1 + 3010 0.67 0.439884
Target:  5'- cGCGcCUGCGGCCagcg-CCG-CGgGCAa -3'
miRNA:   3'- -CGC-GAUGCCGGgcuuaGGCuGCgCGU- -5'
28142 5' -58.4 NC_005887.1 + 3268 0.74 0.162156
Target:  5'- aGCGCUcGCGGCCCuucucgcuGUCCGG-GCGCGg -3'
miRNA:   3'- -CGCGA-UGCCGGGcu------UAGGCUgCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 3529 0.69 0.333693
Target:  5'- aGCGCgccaGGCCCGAAcagaCCGAUGCu-- -3'
miRNA:   3'- -CGCGaug-CCGGGCUUa---GGCUGCGcgu -5'
28142 5' -58.4 NC_005887.1 + 3802 0.7 0.295337
Target:  5'- aUGUUGCGGCCguccagcuugcgCGGAUCgcgguCGGCGCGCGg -3'
miRNA:   3'- cGCGAUGCCGG------------GCUUAG-----GCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 3995 0.7 0.28809
Target:  5'- cGUGCUugAUGGCuUCGAccugcguUCCGGCGCGCu -3'
miRNA:   3'- -CGCGA--UGCCG-GGCUu------AGGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 4272 0.7 0.28809
Target:  5'- cUGCU-CGGCCCGAugaUCG-CGCGCGa -3'
miRNA:   3'- cGCGAuGCCGGGCUua-GGCuGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 4621 0.69 0.350026
Target:  5'- uCGCcGCGGCgCCGGuggccgCCGGCGCGa- -3'
miRNA:   3'- cGCGaUGCCG-GGCUua----GGCUGCGCgu -5'
28142 5' -58.4 NC_005887.1 + 4679 0.71 0.253948
Target:  5'- uGCGCagACGGCgaGggUCUGAUGgGCGc -3'
miRNA:   3'- -CGCGa-UGCCGggCuuAGGCUGCgCGU- -5'
28142 5' -58.4 NC_005887.1 + 4690 0.69 0.325738
Target:  5'- cGCGCcgGCGGCCa----CCGGCGcCGCGg -3'
miRNA:   3'- -CGCGa-UGCCGGgcuuaGGCUGC-GCGU- -5'
28142 5' -58.4 NC_005887.1 + 5144 0.75 0.14147
Target:  5'- cGCGCU---GCCCGAcgUCGGCGCGCc -3'
miRNA:   3'- -CGCGAugcCGGGCUuaGGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 5474 0.68 0.375574
Target:  5'- uCGCUGCGGCgCCGcccgCCGGuucaccgguCGCGCu -3'
miRNA:   3'- cGCGAUGCCG-GGCuua-GGCU---------GCGCGu -5'
28142 5' -58.4 NC_005887.1 + 5567 0.68 0.366919
Target:  5'- gGUGCUGCGGCCgGugcugcggCCGGugcUGCGCc -3'
miRNA:   3'- -CGCGAUGCCGGgCuua-----GGCU---GCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.