miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 5' -58.4 NC_005887.1 + 42001 0.7 0.280983
Target:  5'- gGC-CUGCGGCCCacGUCgagugucgccgCGGCGCGCGa -3'
miRNA:   3'- -CGcGAUGCCGGGcuUAG-----------GCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 41923 0.67 0.411545
Target:  5'- cGUGCUgaGCGGCUCGcagcuGAgcugcCCGGCGUGCu -3'
miRNA:   3'- -CGCGA--UGCCGGGC-----UUa----GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 41719 0.7 0.26719
Target:  5'- gGCGaugacggGCGGCgauCCGAucCCGGCGCGCGg -3'
miRNA:   3'- -CGCga-----UGCCG---GGCUuaGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 41597 0.66 0.499692
Target:  5'- -aGCgGCGGCCCaGGugcggcggCCGGCGCGg- -3'
miRNA:   3'- cgCGaUGCCGGG-CUua------GGCUGCGCgu -5'
28142 5' -58.4 NC_005887.1 + 41000 0.68 0.393293
Target:  5'- uGCGCU-CGGCguugCCGAAcUCGguGCGCGCGc -3'
miRNA:   3'- -CGCGAuGCCG----GGCUUaGGC--UGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 40921 0.71 0.259839
Target:  5'- cGCGCgcgGCGGCUucgccggUGGAUCCGAC-UGCAc -3'
miRNA:   3'- -CGCGa--UGCCGG-------GCUUAGGCUGcGCGU- -5'
28142 5' -58.4 NC_005887.1 + 40737 0.7 0.278879
Target:  5'- cGCGCcaggugcaggauggUGCGGCCgGugaUCGGCGCGCGc -3'
miRNA:   3'- -CGCG--------------AUGCCGGgCuuaGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 40556 0.67 0.420866
Target:  5'- gGCGCU-CGcGCaCGAGUucUCGGCGCGCu -3'
miRNA:   3'- -CGCGAuGC-CGgGCUUA--GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 40382 0.66 0.488443
Target:  5'- cGCGC-GCGaggaaaucgugauGCCCGGcacggCCGACGUGCc -3'
miRNA:   3'- -CGCGaUGC-------------CGGGCUua---GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 40145 0.67 0.449574
Target:  5'- cGCGCUGCGcGCCgCGcucgCCG-CGUGUg -3'
miRNA:   3'- -CGCGAUGC-CGG-GCuua-GGCuGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 39897 0.66 0.489461
Target:  5'- uGUGCgacgGCGGCCCGucgcgcuuuAUCCaGCaGUGCGa -3'
miRNA:   3'- -CGCGa---UGCCGGGCu--------UAGGcUG-CGCGU- -5'
28142 5' -58.4 NC_005887.1 + 38216 0.71 0.253948
Target:  5'- cGCGCU-CGGCCUGAuGUCCGGCauuuucaucGcCGCGg -3'
miRNA:   3'- -CGCGAuGCCGGGCU-UAGGCUG---------C-GCGU- -5'
28142 5' -58.4 NC_005887.1 + 38069 0.67 0.449574
Target:  5'- -aGCUACuGGCCCaaga-CGAUGCGCu -3'
miRNA:   3'- cgCGAUG-CCGGGcuuagGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 37936 0.66 0.469301
Target:  5'- gGCGC-GCGuuguugaaucaGCCCGcAUCCGuuACGCGCc -3'
miRNA:   3'- -CGCGaUGC-----------CGGGCuUAGGC--UGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 37380 0.66 0.489461
Target:  5'- gGCGCUGCuGCgacgaCCGAaucgaaaccGUCUGGCGCGaCGa -3'
miRNA:   3'- -CGCGAUGcCG-----GGCU---------UAGGCUGCGC-GU- -5'
28142 5' -58.4 NC_005887.1 + 36515 0.67 0.420866
Target:  5'- cCGCUGCGGgcuggCCGAAgggcaagaagCCGGcCGCGCGg -3'
miRNA:   3'- cGCGAUGCCg----GGCUUa---------GGCU-GCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 36379 0.66 0.499692
Target:  5'- aGUGC-GCGGCgUCGA--CCGcCGCGCAg -3'
miRNA:   3'- -CGCGaUGCCG-GGCUuaGGCuGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 35648 0.67 0.401441
Target:  5'- aGCGgUGCGaGCUCGAcgCUGucgacauacagcaGCGCGCGa -3'
miRNA:   3'- -CGCgAUGC-CGGGCUuaGGC-------------UGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 35409 0.7 0.274017
Target:  5'- cGCGC-ACGGCCuucgcccaCGAGUCgaucaggucgagCGACGCGUAg -3'
miRNA:   3'- -CGCGaUGCCGG--------GCUUAG------------GCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 35213 0.74 0.153573
Target:  5'- aGCGUgACGGCCgCccGUCCGugGCGCc -3'
miRNA:   3'- -CGCGaUGCCGG-GcuUAGGCugCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.