miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 5' -58.4 NC_005887.1 + 34580 0.77 0.095788
Target:  5'- cCGCUGCGGCCUGA--UgGGCGUGCAg -3'
miRNA:   3'- cGCGAUGCCGGGCUuaGgCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 33846 0.66 0.488443
Target:  5'- cGCGCUugGuggaaGCCCGGcacgccgcgccagAUgcucgugaaggCCGGCGCGCu -3'
miRNA:   3'- -CGCGAugC-----CGGGCU-------------UA-----------GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 33750 0.69 0.325738
Target:  5'- aGCGCgcCGGCCuucaCGAgcAUCUGGCGCgGCGu -3'
miRNA:   3'- -CGCGauGCCGG----GCU--UAGGCUGCG-CGU- -5'
28142 5' -58.4 NC_005887.1 + 33691 0.69 0.333693
Target:  5'- cGCGCUACGGgaagUUCGAAgaccacgCCGcgcuCGCGCAg -3'
miRNA:   3'- -CGCGAUGCC----GGGCUUa------GGCu---GCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 32871 0.68 0.358403
Target:  5'- cCGCUGuuCGuGCCCGuGAagCGGCGCGCGc -3'
miRNA:   3'- cGCGAU--GC-CGGGC-UUagGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 32822 0.7 0.274017
Target:  5'- -gGCUGCauGGCgCGcg-CCGGCGCGCAc -3'
miRNA:   3'- cgCGAUG--CCGgGCuuaGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 32749 0.68 0.375574
Target:  5'- uGCGCUguacGCGGUugCCGAAgCgCGcACGCGCGa -3'
miRNA:   3'- -CGCGA----UGCCG--GGCUUaG-GC-UGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 32746 0.68 0.366919
Target:  5'- gGCGCUcGCGuGCgCG---CCGGCGCGCGc -3'
miRNA:   3'- -CGCGA-UGC-CGgGCuuaGGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 31989 0.71 0.229087
Target:  5'- uGCGCaaccACGGCCCGGAUCUuGCaGCaGCAu -3'
miRNA:   3'- -CGCGa---UGCCGGGCUUAGGcUG-CG-CGU- -5'
28142 5' -58.4 NC_005887.1 + 30811 0.67 0.415258
Target:  5'- cGCGCaccGCGGCCuCGGccaGUUCGAcguccaucugcaugcCGCGCAu -3'
miRNA:   3'- -CGCGa--UGCCGG-GCU---UAGGCU---------------GCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 30480 0.7 0.280983
Target:  5'- uGCGCgacGCGGCCCG--UgCGuuGCGCAc -3'
miRNA:   3'- -CGCGa--UGCCGGGCuuAgGCugCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 29854 0.73 0.185525
Target:  5'- -aGCUACuGGCCCGAGcugCgCGACGCgGCGa -3'
miRNA:   3'- cgCGAUG-CCGGGCUUa--G-GCUGCG-CGU- -5'
28142 5' -58.4 NC_005887.1 + 28893 0.68 0.366919
Target:  5'- aGCGaccgucgACGGCUaCGAAUUgGAUGCGCGc -3'
miRNA:   3'- -CGCga-----UGCCGG-GCUUAGgCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 28590 0.68 0.392394
Target:  5'- cGCGCgugaGCGuGCCUGAccgcAUcgucaucuucccgCCGGCGCGCGu -3'
miRNA:   3'- -CGCGa---UGC-CGGGCU----UA-------------GGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 28452 0.67 0.439884
Target:  5'- uGCGCgugACGacaGCCgCGAAgccgUCGACGCGUu -3'
miRNA:   3'- -CGCGa--UGC---CGG-GCUUa---GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 28048 0.73 0.180625
Target:  5'- aCGCgauuCGGCCCGAG-CCGGCG-GCGg -3'
miRNA:   3'- cGCGau--GCCGGGCUUaGGCUGCgCGU- -5'
28142 5' -58.4 NC_005887.1 + 27670 0.66 0.489461
Target:  5'- cGCGCgcGCGGCuuGAucGUCUGcaucACGUGCc -3'
miRNA:   3'- -CGCGa-UGCCGggCU--UAGGC----UGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 25183 0.69 0.30798
Target:  5'- gGCGCUGgaucuCGGCCgGAcaaccggucgcgaaAUCCGACG-GCGg -3'
miRNA:   3'- -CGCGAU-----GCCGGgCU--------------UAGGCUGCgCGU- -5'
28142 5' -58.4 NC_005887.1 + 25090 0.68 0.358403
Target:  5'- uGCGCUAcCGGCuggCCGGcggccgCCGGCGCGa- -3'
miRNA:   3'- -CGCGAU-GCCG---GGCUua----GGCUGCGCgu -5'
28142 5' -58.4 NC_005887.1 + 25017 0.69 0.341789
Target:  5'- cGCGCgcaagGCGGCCCGcgcgcaCCG-CGuCGCGa -3'
miRNA:   3'- -CGCGa----UGCCGGGCuua---GGCuGC-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.