miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 5' -58.4 NC_005887.1 + 13475 0.66 0.510017
Target:  5'- cGCaGCaGCGGCuugccgCCGAcGUCCGcCGCGCc -3'
miRNA:   3'- -CG-CGaUGCCG------GGCU-UAGGCuGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 41000 0.68 0.393293
Target:  5'- uGCGCU-CGGCguugCCGAAcUCGguGCGCGCGc -3'
miRNA:   3'- -CGCGAuGCCG----GGCUUaGGC--UGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 18464 0.68 0.379075
Target:  5'- gGCGCcGCGGCguaggccaucggguuCgCGAGcgCCGGCGCGCc -3'
miRNA:   3'- -CGCGaUGCCG---------------G-GCUUa-GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 13971 0.79 0.070079
Target:  5'- cCGCgUACGuGCCaCGAAUgCCGACGCGCAc -3'
miRNA:   3'- cGCG-AUGC-CGG-GCUUA-GGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 11479 0.66 0.496612
Target:  5'- uGCGCUcagacgaugccuugGCGGCgCCGGccgccagcgcUCCGGCuGCGCu -3'
miRNA:   3'- -CGCGA--------------UGCCG-GGCUu---------AGGCUG-CGCGu -5'
28142 5' -58.4 NC_005887.1 + 8373 0.66 0.489461
Target:  5'- aGCGCguccauCGcGUUCGGAUCggUGACGCGCu -3'
miRNA:   3'- -CGCGau----GC-CGGGCUUAG--GCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 37380 0.66 0.489461
Target:  5'- gGCGCUGCuGCgacgaCCGAaucgaaaccGUCUGGCGCGaCGa -3'
miRNA:   3'- -CGCGAUGcCG-----GGCU---------UAGGCUGCGC-GU- -5'
28142 5' -58.4 NC_005887.1 + 39897 0.66 0.489461
Target:  5'- uGUGCgacgGCGGCCCGucgcgcuuuAUCCaGCaGUGCGa -3'
miRNA:   3'- -CGCGa---UGCCGGGCu--------UAGGcUG-CGCGU- -5'
28142 5' -58.4 NC_005887.1 + 12520 0.66 0.459381
Target:  5'- cGCGCgucgaaccgUACaGGCUCGggUCCaucgcgaucGCGCGCGc -3'
miRNA:   3'- -CGCG---------AUG-CCGGGCuuAGGc--------UGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 1061 0.67 0.402353
Target:  5'- cGCGCgcacgGCGGCCgGcAAUuuG-CGCGUg -3'
miRNA:   3'- -CGCGa----UGCCGGgC-UUAggCuGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 28452 0.67 0.439884
Target:  5'- uGCGCgugACGacaGCCgCGAAgccgUCGACGCGUu -3'
miRNA:   3'- -CGCGa--UGC---CGG-GCUUa---GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 7291 0.66 0.469301
Target:  5'- -gGUcgAUGcGCCCGAcgCCGACaGCGCc -3'
miRNA:   3'- cgCGa-UGC-CGGGCUuaGGCUG-CGCGu -5'
28142 5' -58.4 NC_005887.1 + 16005 0.66 0.510017
Target:  5'- gGCGCguggcCGGCgcaUCGAuUCCGGCccGCGCGg -3'
miRNA:   3'- -CGCGau---GCCG---GGCUuAGGCUG--CGCGU- -5'
28142 5' -58.4 NC_005887.1 + 14287 0.67 0.420866
Target:  5'- cGCGCcgaacagcGCGGCgCCGcccuGUCCGAggcCGCGCc -3'
miRNA:   3'- -CGCGa-------UGCCG-GGCu---UAGGCU---GCGCGu -5'
28142 5' -58.4 NC_005887.1 + 22589 0.66 0.510017
Target:  5'- uGCGCaGCGGCuuGAAcagauucaccgCCGACGaaaGCc -3'
miRNA:   3'- -CGCGaUGCCGggCUUa----------GGCUGCg--CGu -5'
28142 5' -58.4 NC_005887.1 + 33846 0.66 0.488443
Target:  5'- cGCGCUugGuggaaGCCCGGcacgccgcgccagAUgcucgugaaggCCGGCGCGCu -3'
miRNA:   3'- -CGCGAugC-----CGGGCU-------------UA-----------GGCUGCGCGu -5'
28142 5' -58.4 NC_005887.1 + 36515 0.67 0.420866
Target:  5'- cCGCUGCGGgcuggCCGAAgggcaagaagCCGGcCGCGCGg -3'
miRNA:   3'- cGCGAUGCCg----GGCUUa---------GGCU-GCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 28590 0.68 0.392394
Target:  5'- cGCGCgugaGCGuGCCUGAccgcAUcgucaucuucccgCCGGCGCGCGu -3'
miRNA:   3'- -CGCGa---UGC-CGGGCU----UA-------------GGCUGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 36379 0.66 0.499692
Target:  5'- aGUGC-GCGGCgUCGA--CCGcCGCGCAg -3'
miRNA:   3'- -CGCGaUGCCG-GGCUuaGGCuGCGCGU- -5'
28142 5' -58.4 NC_005887.1 + 14766 0.66 0.489461
Target:  5'- cGCGCc-CGGCCCGc--CCGcCGCGaCGa -3'
miRNA:   3'- -CGCGauGCCGGGCuuaGGCuGCGC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.