miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 3' -59.1 NC_005887.1 + 41621 0.66 0.469403
Target:  5'- gGCGcGGCCCGugaGGaucugCUGCGUcugCGCGGCg -3'
miRNA:   3'- -CGC-UUGGGCua-CCg----GAUGCG---GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 2844 0.66 0.469403
Target:  5'- aGCGGugcACCCGAcaucCCaAUGCCGCaGGCg -3'
miRNA:   3'- -CGCU---UGGGCUacc-GGaUGCGGCG-CCG- -5'
28144 3' -59.1 NC_005887.1 + 17276 0.66 0.469403
Target:  5'- gGCGAGa-CGucgGGCg-GCGCCGCGcGCg -3'
miRNA:   3'- -CGCUUggGCua-CCGgaUGCGGCGC-CG- -5'
28144 3' -59.1 NC_005887.1 + 14506 0.66 0.479356
Target:  5'- cGCGGuGCuuGGUGGUCcgcuUGCaGgCGCGGCc -3'
miRNA:   3'- -CGCU-UGggCUACCGG----AUG-CgGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 41953 0.66 0.479356
Target:  5'- gGCGuGCUCGcGUGGU--GCGUgCGCGGCg -3'
miRNA:   3'- -CGCuUGGGC-UACCGgaUGCG-GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 16938 0.66 0.479356
Target:  5'- uCGuuGCCUGucgaGCCguccGCGCCGCGGUa -3'
miRNA:   3'- cGCu-UGGGCuac-CGGa---UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 1964 0.67 0.408392
Target:  5'- cGUGAACCCGgcGGCCgagaACaucgacaaccuccgGCCggcuacuacgagcGCGGCa -3'
miRNA:   3'- -CGCUUGGGCuaCCGGa---UG--------------CGG-------------CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 28311 0.67 0.411141
Target:  5'- gGCGAcuuguugcuggaaGCCUGuugucgGcGUCUGCGCCggcGCGGCa -3'
miRNA:   3'- -CGCU-------------UGGGCua----C-CGGAUGCGG---CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 8693 0.67 0.412059
Target:  5'- uGCaGGGCCC---GGCgaucCGCCGCGGCg -3'
miRNA:   3'- -CG-CUUGGGcuaCCGgau-GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 22772 0.67 0.412059
Target:  5'- aCGuGCUCGuUGGCUcgACGCCggcGCGGCc -3'
miRNA:   3'- cGCuUGGGCuACCGGa-UGCGG---CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 4625 0.67 0.412059
Target:  5'- cGCG-GCgCCGGUGGCCgcCGgCGCGa- -3'
miRNA:   3'- -CGCuUG-GGCUACCGGauGCgGCGCcg -5'
28144 3' -59.1 NC_005887.1 + 18301 0.67 0.412059
Target:  5'- uCGuuCCCGAUGGCg-AUGaucuCGCGGCa -3'
miRNA:   3'- cGCuuGGGCUACCGgaUGCg---GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 3993 0.67 0.402929
Target:  5'- gGCGuGCuuGAUGGCuucgacCUGCGUUcCGGCg -3'
miRNA:   3'- -CGCuUGggCUACCG------GAUGCGGcGCCG- -5'
28144 3' -59.1 NC_005887.1 + 36134 0.67 0.393929
Target:  5'- gGCGuGGCUCGGUGaucgucucGCCgguuuccuCGUCGCGGCg -3'
miRNA:   3'- -CGC-UUGGGCUAC--------CGGau------GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 36279 0.67 0.385059
Target:  5'- cGCGuacucGCUCGAcucguccgguUGGCCgaucUGCGCgGCGGUc -3'
miRNA:   3'- -CGCu----UGGGCU----------ACCGG----AUGCGgCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 16452 0.67 0.38418
Target:  5'- cGCGuGCgCGcgGGCaUGCGCucgaccgCGCGGCa -3'
miRNA:   3'- -CGCuUGgGCuaCCGgAUGCG-------GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 37770 0.67 0.430697
Target:  5'- cGCuGAACCUGAUcGCCcccgGCGUCGCuugcaugcggGGCg -3'
miRNA:   3'- -CG-CUUGGGCUAcCGGa---UGCGGCG----------CCG- -5'
28144 3' -59.1 NC_005887.1 + 15578 0.67 0.430697
Target:  5'- cGCGAcguCCgGAaacUGGCCgGCGUccaucugacgCGCGGCc -3'
miRNA:   3'- -CGCUu--GGgCU---ACCGGaUGCG----------GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 35333 0.67 0.42693
Target:  5'- cGCGcGCCgCGgcGGCCggccacgagcuucACGCC-CGGCa -3'
miRNA:   3'- -CGCuUGG-GCuaCCGGa------------UGCGGcGCCG- -5'
28144 3' -59.1 NC_005887.1 + 6920 0.67 0.417599
Target:  5'- aGCGAAuCCCGcaacucggcaugGGCC-GCGCCGUcuGGUa -3'
miRNA:   3'- -CGCUU-GGGCua----------CCGGaUGCGGCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.