miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 3' -59.1 NC_005887.1 + 5585 0.7 0.282228
Target:  5'- uGCGuGCCUGcugcGGCCggUGCUGCGGCc -3'
miRNA:   3'- -CGCuUGGGCua--CCGGauGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 6046 0.76 0.105565
Target:  5'- gGUGGugCUGGUGGCa-GCGgCGCGGCa -3'
miRNA:   3'- -CGCUugGGCUACCGgaUGCgGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 6343 0.71 0.238938
Target:  5'- uGCGAACCgacgugCGGUGGCCUGuCGguagauugcccucgaUCGCGGUc -3'
miRNA:   3'- -CGCUUGG------GCUACCGGAU-GC---------------GGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 6920 0.67 0.417599
Target:  5'- aGCGAAuCCCGcaacucggcaugGGCC-GCGCCGUcuGGUa -3'
miRNA:   3'- -CGCUU-GGGCua----------CCGGaUGCGGCG--CCG- -5'
28144 3' -59.1 NC_005887.1 + 7088 0.7 0.249529
Target:  5'- cGCGcuCCUGAacacggaaucgcgcgUGGUCUaacgaggcggggcgGCGCUGCGGCg -3'
miRNA:   3'- -CGCuuGGGCU---------------ACCGGA--------------UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 7341 0.72 0.187006
Target:  5'- aGCGGGCggCCGG-GGCCgAUGUCGCGGUc -3'
miRNA:   3'- -CGCUUG--GGCUaCCGGaUGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 8189 0.71 0.242633
Target:  5'- aGCuGAACCCGAacagcgGcGCCUcgGCGagCGCGGCg -3'
miRNA:   3'- -CG-CUUGGGCUa-----C-CGGA--UGCg-GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 8693 0.67 0.412059
Target:  5'- uGCaGGGCCC---GGCgaucCGCCGCGGCg -3'
miRNA:   3'- -CG-CUUGGGcuaCCGgau-GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 8793 0.72 0.181624
Target:  5'- uCGAAUCCuucGUGGCCgcgacgaagcgcuUAcCGCCGCGGCg -3'
miRNA:   3'- cGCUUGGGc--UACCGG-------------AU-GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 9821 0.66 0.449821
Target:  5'- cGCGAACgcgucgcagCCGGUcagcgcGGCCaaccugaACGCCGCGcGCc -3'
miRNA:   3'- -CGCUUG---------GGCUA------CCGGa------UGCGGCGC-CG- -5'
28144 3' -59.1 NC_005887.1 + 10227 0.66 0.4402
Target:  5'- -gGAugCCGAUGccaGCCguagACGUCGCuccGGCc -3'
miRNA:   3'- cgCUugGGCUAC---CGGa---UGCGGCG---CCG- -5'
28144 3' -59.1 NC_005887.1 + 10513 0.67 0.402929
Target:  5'- cCGuACgCGAUGGgugcaCUGCGCCGuCGGUc -3'
miRNA:   3'- cGCuUGgGCUACCg----GAUGCGGC-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 11113 0.77 0.084378
Target:  5'- gGUGcGCgCGAagcUGGCCgagGCGCCGUGGCg -3'
miRNA:   3'- -CGCuUGgGCU---ACCGGa--UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 11386 0.71 0.213266
Target:  5'- aGCGcAGCCgGAgcgcuggcGGCCgGCGCCGCcaaGGCa -3'
miRNA:   3'- -CGC-UUGGgCUa-------CCGGaUGCGGCG---CCG- -5'
28144 3' -59.1 NC_005887.1 + 12625 0.66 0.466437
Target:  5'- uGCGcAugCCGgcGGCCgucgACGCCacguccuugaaguuGuCGGCg -3'
miRNA:   3'- -CGC-UugGGCuaCCGGa---UGCGG--------------C-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 13039 0.66 0.469403
Target:  5'- cGCGggUcgCCGcuucGGUCUgguauugcuguaGCGUCGCGGCu -3'
miRNA:   3'- -CGCuuG--GGCua--CCGGA------------UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 13367 0.71 0.224629
Target:  5'- -aGAGCCCGGcgaUGGCgCUcGCGCugaaggccggCGCGGCg -3'
miRNA:   3'- cgCUUGGGCU---ACCG-GA-UGCG----------GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 13542 0.69 0.311367
Target:  5'- cGCGAAUgCGAUcGGCgaUGCGCUGCcGCc -3'
miRNA:   3'- -CGCUUGgGCUA-CCGg-AUGCGGCGcCG- -5'
28144 3' -59.1 NC_005887.1 + 14301 0.7 0.271191
Target:  5'- cGCuGAACCCGcaagcgcaGGCCgACGCCgacaagcaggugaacGCGGCg -3'
miRNA:   3'- -CG-CUUGGGCua------CCGGaUGCGG---------------CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 14389 0.66 0.449821
Target:  5'- cGCGuucACCUGcuugucggcGUcGGCCUGCGCuUGCGGg -3'
miRNA:   3'- -CGCu--UGGGC---------UA-CCGGAUGCG-GCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.