miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 3' -59.1 NC_005887.1 + 846 0.73 0.16719
Target:  5'- cGCGAagaaagccaagguGCCCGuggacgcGUGGCCcGCGCCGCcggacgagucaGGCg -3'
miRNA:   3'- -CGCU-------------UGGGC-------UACCGGaUGCGGCG-----------CCG- -5'
28144 3' -59.1 NC_005887.1 + 958 0.66 0.469403
Target:  5'- uCGAAgCCGA-GGCCgccugacuCGuCCGgCGGCg -3'
miRNA:   3'- cGCUUgGGCUaCCGGau------GC-GGC-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 1472 0.68 0.367721
Target:  5'- -gGAGCCCGAc-GCCgacgGCG-UGCGGCg -3'
miRNA:   3'- cgCUUGGGCUacCGGa---UGCgGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 1964 0.67 0.408392
Target:  5'- cGUGAACCCGgcGGCCgagaACaucgacaaccuccgGCCggcuacuacgagcGCGGCa -3'
miRNA:   3'- -CGCUUGGGCuaCCGGa---UG--------------CGG-------------CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 2498 0.69 0.322093
Target:  5'- gGCGAGCCC---GGCCUGCucgugcacccggacuGCCGCacgcugcgcaaGGCg -3'
miRNA:   3'- -CGCUUGGGcuaCCGGAUG---------------CGGCG-----------CCG- -5'
28144 3' -59.1 NC_005887.1 + 2614 0.66 0.459556
Target:  5'- gGCGGaagcaguagccGCCCGAcagcGCCuUGCGCagcguGCGGCa -3'
miRNA:   3'- -CGCU-----------UGGGCUac--CGG-AUGCGg----CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 2844 0.66 0.469403
Target:  5'- aGCGGugcACCCGAcaucCCaAUGCCGCaGGCg -3'
miRNA:   3'- -CGCU---UGGGCUacc-GGaUGCGGCG-CCG- -5'
28144 3' -59.1 NC_005887.1 + 2915 0.68 0.333888
Target:  5'- cGCGAACgacgccgCCGccaagcUGcGCaaGCGCCGCGGCa -3'
miRNA:   3'- -CGCUUG-------GGCu-----AC-CGgaUGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 3001 0.75 0.124639
Target:  5'- gGCGGugCCGcgGcGCUUGCGCagcuugGCGGCg -3'
miRNA:   3'- -CGCUugGGCuaC-CGGAUGCGg-----CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 3009 0.71 0.213266
Target:  5'- aCGcGCCUGc-GGCCaGCGCCGCGGg -3'
miRNA:   3'- cGCuUGGGCuaCCGGaUGCGGCGCCg -5'
28144 3' -59.1 NC_005887.1 + 3599 0.67 0.402929
Target:  5'- gGCGAACCaGA-GGCgCUgcaucggcACGuuGCGGUa -3'
miRNA:   3'- -CGCUUGGgCUaCCG-GA--------UGCggCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 3993 0.67 0.402929
Target:  5'- gGCGuGCuuGAUGGCuucgacCUGCGUUcCGGCg -3'
miRNA:   3'- -CGCuUGggCUACCG------GAUGCGGcGCCG- -5'
28144 3' -59.1 NC_005887.1 + 4160 0.73 0.159289
Target:  5'- cGCGAACUCGAUGccgaucugcGCCUGCuuGCCcgugagcaGCGGCu -3'
miRNA:   3'- -CGCUUGGGCUAC---------CGGAUG--CGG--------CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 4625 0.67 0.412059
Target:  5'- cGCG-GCgCCGGUGGCCgcCGgCGCGa- -3'
miRNA:   3'- -CGCuUG-GGCUACCGGauGCgGCGCcg -5'
28144 3' -59.1 NC_005887.1 + 4654 0.68 0.350927
Target:  5'- uUGcAUCUGcgcGGCCUGCGCCucgGCGGCu -3'
miRNA:   3'- cGCuUGGGCua-CCGGAUGCGG---CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 4695 0.78 0.079751
Target:  5'- uUGAucGCgCCGgcGGCCaccgGCGCCGCGGCg -3'
miRNA:   3'- cGCU--UG-GGCuaCCGGa---UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 4863 0.69 0.326773
Target:  5'- cGCGAGauCCgCGAgcacGGCCU-CGCCGgcUGGCg -3'
miRNA:   3'- -CGCUU--GG-GCUa---CCGGAuGCGGC--GCCG- -5'
28144 3' -59.1 NC_005887.1 + 5405 0.74 0.131678
Target:  5'- gGUGAACCgGcgGGCg-GCGCCGCaGCg -3'
miRNA:   3'- -CGCUUGGgCuaCCGgaUGCGGCGcCG- -5'
28144 3' -59.1 NC_005887.1 + 5496 0.72 0.182108
Target:  5'- aGCGGGCgCG-UGGUCgcgccgguCGCUGCGGCg -3'
miRNA:   3'- -CGCUUGgGCuACCGGau------GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 5550 0.72 0.192019
Target:  5'- uGCGG--CCGGUgcugcgccaucGGCCUGCGUCGUGGUg -3'
miRNA:   3'- -CGCUugGGCUA-----------CCGGAUGCGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.