miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 3' -59.1 NC_005887.1 + 42111 0.69 0.296519
Target:  5'- gGCGAGCagguCC-AUGuccGCCUuguacgcaucgcGCGCCGCGGCg -3'
miRNA:   3'- -CGCUUG----GGcUAC---CGGA------------UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 41953 0.66 0.479356
Target:  5'- gGCGuGCUCGcGUGGU--GCGUgCGCGGCg -3'
miRNA:   3'- -CGCuUGGGC-UACCGgaUGCG-GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 41673 0.66 0.473371
Target:  5'- aCGGGCCgCGccGGCCgccgcaccugggcCGCCGCuGGCc -3'
miRNA:   3'- cGCUUGG-GCuaCCGGau-----------GCGGCG-CCG- -5'
28144 3' -59.1 NC_005887.1 + 41621 0.66 0.469403
Target:  5'- gGCGcGGCCCGugaGGaucugCUGCGUcugCGCGGCg -3'
miRNA:   3'- -CGC-UUGGGCua-CCg----GAUGCG---GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 41046 0.66 0.43829
Target:  5'- uCGAGCUCGGgcacguacaucaGGCCcGCGCCgaaGCGGUc -3'
miRNA:   3'- cGCUUGGGCUa-----------CCGGaUGCGG---CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 40846 0.67 0.393929
Target:  5'- aCGAACCuCGAccGCCggcucgGCgGCgCGCGGCg -3'
miRNA:   3'- cGCUUGG-GCUacCGGa-----UG-CG-GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 40754 0.68 0.334686
Target:  5'- gGCGAuCgCCGuUGGC--GCGCCGCGcGCc -3'
miRNA:   3'- -CGCUuG-GGCuACCGgaUGCGGCGC-CG- -5'
28144 3' -59.1 NC_005887.1 + 40031 0.66 0.469403
Target:  5'- gGCGcGGCUCGAggcggccGGCCUACGCC-CGa- -3'
miRNA:   3'- -CGC-UUGGGCUa------CCGGAUGCGGcGCcg -5'
28144 3' -59.1 NC_005887.1 + 39984 0.69 0.296519
Target:  5'- gGCGAgACgCCG-UGGCCcgacaugcaggACGUCGCGGUg -3'
miRNA:   3'- -CGCU-UG-GGCuACCGGa----------UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 38679 0.67 0.402929
Target:  5'- uUGAACCCGAacUGGCCgaaGCGCUacauCGcGCu -3'
miRNA:   3'- cGCUUGGGCU--ACCGGa--UGCGGc---GC-CG- -5'
28144 3' -59.1 NC_005887.1 + 38216 0.68 0.341116
Target:  5'- cGCGcucGGCCUGAUGuCCggcauuuucauCGCCGCGGUu -3'
miRNA:   3'- -CGC---UUGGGCUACcGGau---------GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 37770 0.67 0.430697
Target:  5'- cGCuGAACCUGAUcGCCcccgGCGUCGCuugcaugcggGGCg -3'
miRNA:   3'- -CG-CUUGGGCUAcCGGa---UGCGGCG----------CCG- -5'
28144 3' -59.1 NC_005887.1 + 37047 0.68 0.376323
Target:  5'- cGCuGAGCCCcuucuuGccGGCCUucuCGCUGaCGGCg -3'
miRNA:   3'- -CG-CUUGGG------CuaCCGGAu--GCGGC-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 36279 0.67 0.385059
Target:  5'- cGCGuacucGCUCGAcucguccgguUGGCCgaucUGCGCgGCGGUc -3'
miRNA:   3'- -CGCu----UGGGCU----------ACCGG----AUGCGgCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 36243 0.66 0.4402
Target:  5'- gGUGAuCCCGGUcGGCaCggugacGCGCCGCGa- -3'
miRNA:   3'- -CGCUuGGGCUA-CCG-Ga-----UGCGGCGCcg -5'
28144 3' -59.1 NC_005887.1 + 36134 0.67 0.393929
Target:  5'- gGCGuGGCUCGGUGaucgucucGCCgguuuccuCGUCGCGGCg -3'
miRNA:   3'- -CGC-UUGGGCUAC--------CGGau------GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 36116 0.71 0.213266
Target:  5'- cGCGAGCgCGucgaGGCCuUGCGCCucgcCGGCg -3'
miRNA:   3'- -CGCUUGgGCua--CCGG-AUGCGGc---GCCG- -5'
28144 3' -59.1 NC_005887.1 + 35956 0.7 0.268487
Target:  5'- uGCGcGACCUGAaguacgGGCgCgGCGUCGCGGUg -3'
miRNA:   3'- -CGC-UUGGGCUa-----CCG-GaUGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 35914 0.67 0.385059
Target:  5'- aGCGcAAUCCGcaGGCgaugauCUACGCCgacGCGGCg -3'
miRNA:   3'- -CGC-UUGGGCuaCCG------GAUGCGG---CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 35572 0.68 0.359256
Target:  5'- gGCGAGCgCCGGgcacacGGCCUugGCCuu-GCa -3'
miRNA:   3'- -CGCUUG-GGCUa-----CCGGAugCGGcgcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.