miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 3' -59.1 NC_005887.1 + 18393 1.14 0.000153
Target:  5'- cGCGAACCCGAUGGCCUACGCCGCGGCg -3'
miRNA:   3'- -CGCUUGGGCUACCGGAUGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 16104 0.82 0.037918
Target:  5'- gGUGAAacgcuuUCCGGUGGCgCUGCGCCGCGcGCa -3'
miRNA:   3'- -CGCUU------GGGCUACCG-GAUGCGGCGC-CG- -5'
28144 3' -59.1 NC_005887.1 + 35419 0.8 0.050566
Target:  5'- cGUGGugCCGGgcgugaagcucgUGGCCggcCGCCGCGGCg -3'
miRNA:   3'- -CGCUugGGCU------------ACCGGau-GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 31088 0.78 0.069222
Target:  5'- cGCG-GCCUGcgaauaGUGGCCUGCGCCGCGccacGCg -3'
miRNA:   3'- -CGCuUGGGC------UACCGGAUGCGGCGC----CG- -5'
28144 3' -59.1 NC_005887.1 + 4695 0.78 0.079751
Target:  5'- uUGAucGCgCCGgcGGCCaccgGCGCCGCGGCg -3'
miRNA:   3'- cGCU--UG-GGCuaCCGGa---UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 11113 0.77 0.084378
Target:  5'- gGUGcGCgCGAagcUGGCCgagGCGCCGUGGCg -3'
miRNA:   3'- -CGCuUGgGCU---ACCGGa--UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 32073 0.76 0.102665
Target:  5'- uCGAACguuCUGGcUGGCCUACGCCaacaGCGGCa -3'
miRNA:   3'- cGCUUG---GGCU-ACCGGAUGCGG----CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 6046 0.76 0.105565
Target:  5'- gGUGGugCUGGUGGCa-GCGgCGCGGCa -3'
miRNA:   3'- -CGCUugGGCUACCGgaUGCgGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 3001 0.75 0.124639
Target:  5'- gGCGGugCCGcgGcGCUUGCGCagcuugGCGGCg -3'
miRNA:   3'- -CGCUugGGCuaC-CGGAUGCGg-----CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 15059 0.75 0.124639
Target:  5'- gGCGGcacGCCUGc-GGCCUGCGCggccugCGCGGCg -3'
miRNA:   3'- -CGCU---UGGGCuaCCGGAUGCG------GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 5405 0.74 0.131678
Target:  5'- gGUGAACCgGcgGGCg-GCGCCGCaGCg -3'
miRNA:   3'- -CGCUUGGgCuaCCGgaUGCGGCGcCG- -5'
28144 3' -59.1 NC_005887.1 + 14802 0.74 0.135334
Target:  5'- cGCuGGACCCGAUcaaucuggcGGCCgcgACGCUGaUGGCg -3'
miRNA:   3'- -CG-CUUGGGCUA---------CCGGa--UGCGGC-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 25743 0.74 0.146867
Target:  5'- -gGAACCCacugaccgacGAUGGCgacGCGCUGCGGCu -3'
miRNA:   3'- cgCUUGGG----------CUACCGga-UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 4160 0.73 0.159289
Target:  5'- cGCGAACUCGAUGccgaucugcGCCUGCuuGCCcgugagcaGCGGCu -3'
miRNA:   3'- -CGCUUGGGCUAC---------CGGAUG--CGG--------CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 846 0.73 0.16719
Target:  5'- cGCGAagaaagccaagguGCCCGuggacgcGUGGCCcGCGCCGCcggacgagucaGGCg -3'
miRNA:   3'- -CGCU-------------UGGGC-------UACCGGaUGCGGCG-----------CCG- -5'
28144 3' -59.1 NC_005887.1 + 34594 0.73 0.16809
Target:  5'- aCGAACCCG--GGCaucCGCUGCGGCc -3'
miRNA:   3'- cGCUUGGGCuaCCGgauGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 8793 0.72 0.181624
Target:  5'- uCGAAUCCuucGUGGCCgcgacgaagcgcuUAcCGCCGCGGCg -3'
miRNA:   3'- cGCUUGGGc--UACCGG-------------AU-GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 5496 0.72 0.182108
Target:  5'- aGCGGGCgCG-UGGUCgcgccgguCGCUGCGGCg -3'
miRNA:   3'- -CGCUUGgGCuACCGGau------GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 7341 0.72 0.187006
Target:  5'- aGCGGGCggCCGG-GGCCgAUGUCGCGGUc -3'
miRNA:   3'- -CGCUUG--GGCUaCCGGaUGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 5550 0.72 0.192019
Target:  5'- uGCGG--CCGGUgcugcgccaucGGCCUGCGUCGUGGUg -3'
miRNA:   3'- -CGCUugGGCUA-----------CCGGAUGCGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.