miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 3' -59.1 NC_005887.1 + 39984 0.69 0.296519
Target:  5'- gGCGAgACgCCG-UGGCCcgacaugcaggACGUCGCGGUg -3'
miRNA:   3'- -CGCU-UG-GGCuACCGGa----------UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 16505 0.71 0.242633
Target:  5'- gGCGAugUCGcaGGCCgaucgcguCGCCGcCGGCg -3'
miRNA:   3'- -CGCUugGGCuaCCGGau------GCGGC-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 33802 0.7 0.247003
Target:  5'- cGCGGACCCac-GGCCaccACGCgggugucaggucggCGCGGCg -3'
miRNA:   3'- -CGCUUGGGcuaCCGGa--UGCG--------------GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 15369 0.7 0.248896
Target:  5'- cGUGAcGCCCGAgcaGGUCgACGCCGC-GCu -3'
miRNA:   3'- -CGCU-UGGGCUa--CCGGaUGCGGCGcCG- -5'
28144 3' -59.1 NC_005887.1 + 7088 0.7 0.249529
Target:  5'- cGCGcuCCUGAacacggaaucgcgcgUGGUCUaacgaggcggggcgGCGCUGCGGCg -3'
miRNA:   3'- -CGCuuGGGCU---------------ACCGGA--------------UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 14962 0.7 0.255292
Target:  5'- cGCGccgcACUCGAc-GCCUACGCCGCgcaGGCc -3'
miRNA:   3'- -CGCu---UGGGCUacCGGAUGCGGCG---CCG- -5'
28144 3' -59.1 NC_005887.1 + 24948 0.7 0.261822
Target:  5'- cGCGuGCgCGcgGGCCgccuUGCgCGCGGCc -3'
miRNA:   3'- -CGCuUGgGCuaCCGGau--GCG-GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 14301 0.7 0.271191
Target:  5'- cGCuGAACCCGcaagcgcaGGCCgACGCCgacaagcaggugaacGCGGCg -3'
miRNA:   3'- -CG-CUUGGGCua------CCGGaUGCGG---------------CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 23194 0.7 0.282929
Target:  5'- cGCGAucacgGCCgGGggcggcuacuucaagGGCC-ACGCCGaCGGCa -3'
miRNA:   3'- -CGCU-----UGGgCUa--------------CCGGaUGCGGC-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 32826 0.71 0.236502
Target:  5'- aGCGGGCCgacgUGAUGGCCgccgUGCaggucaaGCGGCa -3'
miRNA:   3'- -CGCUUGG----GCUACCGGau--GCGg------CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 13367 0.71 0.224629
Target:  5'- -aGAGCCCGGcgaUGGCgCUcGCGCugaaggccggCGCGGCg -3'
miRNA:   3'- cgCUUGGGCU---ACCG-GA-UGCG----------GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 3009 0.71 0.213266
Target:  5'- aCGcGCCUGc-GGCCaGCGCCGCGGg -3'
miRNA:   3'- cGCuUGGGCuaCCGGaUGCGGCGCCg -5'
28144 3' -59.1 NC_005887.1 + 16104 0.82 0.037918
Target:  5'- gGUGAAacgcuuUCCGGUGGCgCUGCGCCGCGcGCa -3'
miRNA:   3'- -CGCUU------GGGCUACCG-GAUGCGGCGC-CG- -5'
28144 3' -59.1 NC_005887.1 + 11113 0.77 0.084378
Target:  5'- gGUGcGCgCGAagcUGGCCgagGCGCCGUGGCg -3'
miRNA:   3'- -CGCuUGgGCU---ACCGGa--UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 6046 0.76 0.105565
Target:  5'- gGUGGugCUGGUGGCa-GCGgCGCGGCa -3'
miRNA:   3'- -CGCUugGGCUACCGgaUGCgGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 5405 0.74 0.131678
Target:  5'- gGUGAACCgGcgGGCg-GCGCCGCaGCg -3'
miRNA:   3'- -CGCUUGGgCuaCCGgaUGCGGCGcCG- -5'
28144 3' -59.1 NC_005887.1 + 14802 0.74 0.135334
Target:  5'- cGCuGGACCCGAUcaaucuggcGGCCgcgACGCUGaUGGCg -3'
miRNA:   3'- -CG-CUUGGGCUA---------CCGGa--UGCGGC-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 846 0.73 0.16719
Target:  5'- cGCGAagaaagccaagguGCCCGuggacgcGUGGCCcGCGCCGCcggacgagucaGGCg -3'
miRNA:   3'- -CGCU-------------UGGGC-------UACCGGaUGCGGCG-----------CCG- -5'
28144 3' -59.1 NC_005887.1 + 31791 0.72 0.202401
Target:  5'- uGCGAGCCa-GUGGUCUGcCGCCGCa-- -3'
miRNA:   3'- -CGCUUGGgcUACCGGAU-GCGGCGccg -5'
28144 3' -59.1 NC_005887.1 + 11386 0.71 0.213266
Target:  5'- aGCGcAGCCgGAgcgcuggcGGCCgGCGCCGCcaaGGCa -3'
miRNA:   3'- -CGC-UUGGgCUa-------CCGGaUGCGGCG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.