Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28144 | 3' | -59.1 | NC_005887.1 | + | 31712 | 0.65 | 0.488401 |
Target: 5'- cGCGAugCUGAcUGGCUgcucUGCCgggauggaaagugGCGGCc -3' miRNA: 3'- -CGCUugGGCU-ACCGGau--GCGG-------------CGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 37770 | 0.67 | 0.430697 |
Target: 5'- cGCuGAACCUGAUcGCCcccgGCGUCGCuugcaugcggGGCg -3' miRNA: 3'- -CG-CUUGGGCUAcCGGa---UGCGGCG----------CCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 14895 | 0.67 | 0.402929 |
Target: 5'- cGCGAACgUGcccGCCaucaGCGUCGCGGCc -3' miRNA: 3'- -CGCUUGgGCuacCGGa---UGCGGCGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 35419 | 0.8 | 0.050566 |
Target: 5'- cGUGGugCCGGgcgugaagcucgUGGCCggcCGCCGCGGCg -3' miRNA: 3'- -CGCUugGGCU------------ACCGGau-GCGGCGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 958 | 0.66 | 0.469403 |
Target: 5'- uCGAAgCCGA-GGCCgccugacuCGuCCGgCGGCg -3' miRNA: 3'- cGCUUgGGCUaCCGGau------GC-GGC-GCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 13039 | 0.66 | 0.469403 |
Target: 5'- cGCGggUcgCCGcuucGGUCUgguauugcuguaGCGUCGCGGCu -3' miRNA: 3'- -CGCuuG--GGCua--CCGGA------------UGCGGCGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 12625 | 0.66 | 0.466437 |
Target: 5'- uGCGcAugCCGgcGGCCgucgACGCCacguccuugaaguuGuCGGCg -3' miRNA: 3'- -CGC-UugGGCuaCCGGa---UGCGG--------------C-GCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 2614 | 0.66 | 0.459556 |
Target: 5'- gGCGGaagcaguagccGCCCGAcagcGCCuUGCGCagcguGCGGCa -3' miRNA: 3'- -CGCU-----------UGGGCUac--CGG-AUGCGg----CGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 29464 | 0.66 | 0.449821 |
Target: 5'- uCGAGCCUGAUcGCgaccGCGCCGCaugGGCc -3' miRNA: 3'- cGCUUGGGCUAcCGga--UGCGGCG---CCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 15578 | 0.67 | 0.430697 |
Target: 5'- cGCGAcguCCgGAaacUGGCCgGCGUccaucugacgCGCGGCc -3' miRNA: 3'- -CGCUu--GGgCU---ACCGGaUGCG----------GCGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 36243 | 0.66 | 0.4402 |
Target: 5'- gGUGAuCCCGGUcGGCaCggugacGCGCCGCGa- -3' miRNA: 3'- -CGCUuGGGCUA-CCG-Ga-----UGCGGCGCcg -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 21721 | 0.66 | 0.459556 |
Target: 5'- aGCGAcacGCCCGucagauUGGUCgGCGUCG-GGUa -3' miRNA: 3'- -CGCU---UGGGCu-----ACCGGaUGCGGCgCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 16938 | 0.66 | 0.479356 |
Target: 5'- uCGuuGCCUGucgaGCCguccGCGCCGCGGUa -3' miRNA: 3'- cGCu-UGGGCuac-CGGa---UGCGGCGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 10227 | 0.66 | 0.4402 |
Target: 5'- -gGAugCCGAUGccaGCCguagACGUCGCuccGGCc -3' miRNA: 3'- cgCUugGGCUAC---CGGa---UGCGGCG---CCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 30369 | 0.66 | 0.479356 |
Target: 5'- -aGAACgUGAUcGGCCUgacugcgaACGUcgugCGCGGCa -3' miRNA: 3'- cgCUUGgGCUA-CCGGA--------UGCG----GCGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 18632 | 0.66 | 0.459556 |
Target: 5'- cGCGAcgagcaugucGCCCGcgaaGCCgGCGCCGCcGCc -3' miRNA: 3'- -CGCU----------UGGGCuac-CGGaUGCGGCGcCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 41046 | 0.66 | 0.43829 |
Target: 5'- uCGAGCUCGGgcacguacaucaGGCCcGCGCCgaaGCGGUc -3' miRNA: 3'- cGCUUGGGCUa-----------CCGGaUGCGG---CGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 26402 | 0.67 | 0.412059 |
Target: 5'- cGCGcACCC---GGCCaGCGCCGgccaCGGCc -3' miRNA: 3'- -CGCuUGGGcuaCCGGaUGCGGC----GCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 41673 | 0.66 | 0.473371 |
Target: 5'- aCGGGCCgCGccGGCCgccgcaccugggcCGCCGCuGGCc -3' miRNA: 3'- cGCUUGG-GCuaCCGGau-----------GCGGCG-CCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 30468 | 0.66 | 0.466437 |
Target: 5'- gGCGAACUCGGcgUGGCgaaguuuucagaggCgACGCCgaGCGGUa -3' miRNA: 3'- -CGCUUGGGCU--ACCG--------------GaUGCGG--CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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