miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 3' -59.1 NC_005887.1 + 21877 0.67 0.402929
Target:  5'- gGCGcGCCC---GGCa-GCGCCGCGGa -3'
miRNA:   3'- -CGCuUGGGcuaCCGgaUGCGGCGCCg -5'
28144 3' -59.1 NC_005887.1 + 14895 0.67 0.402929
Target:  5'- cGCGAACgUGcccGCCaucaGCGUCGCGGCc -3'
miRNA:   3'- -CGCUUGgGCuacCGGa---UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 3993 0.67 0.402929
Target:  5'- gGCGuGCuuGAUGGCuucgacCUGCGUUcCGGCg -3'
miRNA:   3'- -CGCuUGggCUACCG------GAUGCGGcGCCG- -5'
28144 3' -59.1 NC_005887.1 + 36134 0.67 0.393929
Target:  5'- gGCGuGGCUCGGUGaucgucucGCCgguuuccuCGUCGCGGCg -3'
miRNA:   3'- -CGC-UUGGGCUAC--------CGGau------GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 40846 0.67 0.393929
Target:  5'- aCGAACCuCGAccGCCggcucgGCgGCgCGCGGCg -3'
miRNA:   3'- cGCUUGG-GCUacCGGa-----UG-CG-GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 36279 0.67 0.385059
Target:  5'- cGCGuacucGCUCGAcucguccgguUGGCCgaucUGCGCgGCGGUc -3'
miRNA:   3'- -CGCu----UGGGCU----------ACCGG----AUGCGgCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 35914 0.67 0.385059
Target:  5'- aGCGcAAUCCGcaGGCgaugauCUACGCCgacGCGGCg -3'
miRNA:   3'- -CGC-UUGGGCuaCCG------GAUGCGG---CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 16452 0.67 0.38418
Target:  5'- cGCGuGCgCGcgGGCaUGCGCucgaccgCGCGGCa -3'
miRNA:   3'- -CGCuUGgGCuaCCGgAUGCG-------GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 15932 0.68 0.376323
Target:  5'- cGCGGGCCggaauCGAUGcGCCggccacGCGCCGCa-- -3'
miRNA:   3'- -CGCUUGG-----GCUAC-CGGa-----UGCGGCGccg -5'
28144 3' -59.1 NC_005887.1 + 37047 0.68 0.376323
Target:  5'- cGCuGAGCCCcuucuuGccGGCCUucuCGCUGaCGGCg -3'
miRNA:   3'- -CG-CUUGGG------CuaCCGGAu--GCGGC-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 25211 0.68 0.376323
Target:  5'- aCGAauguGCUCGAcGaCCUGCaGCUGCGGCg -3'
miRNA:   3'- cGCU----UGGGCUaCcGGAUG-CGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 16634 0.68 0.376323
Target:  5'- uGCGGGCCCGGUcgagaucGGCuucgugcacgaguugCUgacgcgcccacucgGCGCCGgCGGCg -3'
miRNA:   3'- -CGCUUGGGCUA-------CCG---------------GA--------------UGCGGC-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 1472 0.68 0.367721
Target:  5'- -gGAGCCCGAc-GCCgacgGCG-UGCGGCg -3'
miRNA:   3'- cgCUUGGGCUacCGGa---UGCgGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 16184 0.68 0.359256
Target:  5'- gGCGAACCUGcgcgaagaGGCC-GCGCUGCGa- -3'
miRNA:   3'- -CGCUUGGGCua------CCGGaUGCGGCGCcg -5'
28144 3' -59.1 NC_005887.1 + 35572 0.68 0.359256
Target:  5'- gGCGAGCgCCGGgcacacGGCCUugGCCuu-GCa -3'
miRNA:   3'- -CGCUUG-GGCUa-----CCGGAugCGGcgcCG- -5'
28144 3' -59.1 NC_005887.1 + 4654 0.68 0.350927
Target:  5'- uUGcAUCUGcgcGGCCUGCGCCucgGCGGCu -3'
miRNA:   3'- cGCuUGGGCua-CCGGAUGCGG---CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 14744 0.68 0.350102
Target:  5'- aCGAGCCCGAUcgugcggGGCa-GCGUCGaacCGGCg -3'
miRNA:   3'- cGCUUGGGCUA-------CCGgaUGCGGC---GCCG- -5'
28144 3' -59.1 NC_005887.1 + 15937 0.68 0.342737
Target:  5'- cCGAGCugCUGGUGcGCCUGCuGCgCGCGGg -3'
miRNA:   3'- cGCUUG--GGCUAC-CGGAUG-CG-GCGCCg -5'
28144 3' -59.1 NC_005887.1 + 38216 0.68 0.341116
Target:  5'- cGCGcucGGCCUGAUGuCCggcauuuucauCGCCGCGGUu -3'
miRNA:   3'- -CGC---UUGGGCUACcGGau---------GCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 40754 0.68 0.334686
Target:  5'- gGCGAuCgCCGuUGGC--GCGCCGCGcGCc -3'
miRNA:   3'- -CGCUuG-GGCuACCGgaUGCGGCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.