Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28144 | 3' | -59.1 | NC_005887.1 | + | 9821 | 0.66 | 0.449821 |
Target: 5'- cGCGAACgcgucgcagCCGGUcagcgcGGCCaaccugaACGCCGCGcGCc -3' miRNA: 3'- -CGCUUG---------GGCUA------CCGGa------UGCGGCGC-CG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 29464 | 0.66 | 0.449821 |
Target: 5'- uCGAGCCUGAUcGCgaccGCGCCGCaugGGCc -3' miRNA: 3'- cGCUUGGGCUAcCGga--UGCGGCG---CCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 14389 | 0.66 | 0.449821 |
Target: 5'- cGCGuucACCUGcuugucggcGUcGGCCUGCGCuUGCGGg -3' miRNA: 3'- -CGCu--UGGGC---------UA-CCGGAUGCG-GCGCCg -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 36243 | 0.66 | 0.4402 |
Target: 5'- gGUGAuCCCGGUcGGCaCggugacGCGCCGCGa- -3' miRNA: 3'- -CGCUuGGGCUA-CCG-Ga-----UGCGGCGCcg -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 10227 | 0.66 | 0.4402 |
Target: 5'- -gGAugCCGAUGccaGCCguagACGUCGCuccGGCc -3' miRNA: 3'- cgCUugGGCUAC---CGGa---UGCGGCG---CCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 41046 | 0.66 | 0.43829 |
Target: 5'- uCGAGCUCGGgcacguacaucaGGCCcGCGCCgaaGCGGUc -3' miRNA: 3'- cGCUUGGGCUa-----------CCGGaUGCGG---CGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 37770 | 0.67 | 0.430697 |
Target: 5'- cGCuGAACCUGAUcGCCcccgGCGUCGCuugcaugcggGGCg -3' miRNA: 3'- -CG-CUUGGGCUAcCGGa---UGCGGCG----------CCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 15578 | 0.67 | 0.430697 |
Target: 5'- cGCGAcguCCgGAaacUGGCCgGCGUccaucugacgCGCGGCc -3' miRNA: 3'- -CGCUu--GGgCU---ACCGGaUGCG----------GCGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 35333 | 0.67 | 0.42693 |
Target: 5'- cGCGcGCCgCGgcGGCCggccacgagcuucACGCC-CGGCa -3' miRNA: 3'- -CGCuUGG-GCuaCCGGa------------UGCGGcGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 6920 | 0.67 | 0.417599 |
Target: 5'- aGCGAAuCCCGcaacucggcaugGGCC-GCGCCGUcuGGUa -3' miRNA: 3'- -CGCUU-GGGCua----------CCGGaUGCGGCG--CCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 26402 | 0.67 | 0.412059 |
Target: 5'- cGCGcACCC---GGCCaGCGCCGgccaCGGCc -3' miRNA: 3'- -CGCuUGGGcuaCCGGaUGCGGC----GCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 18301 | 0.67 | 0.412059 |
Target: 5'- uCGuuCCCGAUGGCg-AUGaucuCGCGGCa -3' miRNA: 3'- cGCuuGGGCUACCGgaUGCg---GCGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 4625 | 0.67 | 0.412059 |
Target: 5'- cGCG-GCgCCGGUGGCCgcCGgCGCGa- -3' miRNA: 3'- -CGCuUG-GGCUACCGGauGCgGCGCcg -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 22772 | 0.67 | 0.412059 |
Target: 5'- aCGuGCUCGuUGGCUcgACGCCggcGCGGCc -3' miRNA: 3'- cGCuUGGGCuACCGGa-UGCGG---CGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 8693 | 0.67 | 0.412059 |
Target: 5'- uGCaGGGCCC---GGCgaucCGCCGCGGCg -3' miRNA: 3'- -CG-CUUGGGcuaCCGgau-GCGGCGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 28311 | 0.67 | 0.411141 |
Target: 5'- gGCGAcuuguugcuggaaGCCUGuugucgGcGUCUGCGCCggcGCGGCa -3' miRNA: 3'- -CGCU-------------UGGGCua----C-CGGAUGCGG---CGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 1964 | 0.67 | 0.408392 |
Target: 5'- cGUGAACCCGgcGGCCgagaACaucgacaaccuccgGCCggcuacuacgagcGCGGCa -3' miRNA: 3'- -CGCUUGGGCuaCCGGa---UG--------------CGG-------------CGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 3993 | 0.67 | 0.402929 |
Target: 5'- gGCGuGCuuGAUGGCuucgacCUGCGUUcCGGCg -3' miRNA: 3'- -CGCuUGggCUACCG------GAUGCGGcGCCG- -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 21877 | 0.67 | 0.402929 |
Target: 5'- gGCGcGCCC---GGCa-GCGCCGCGGa -3' miRNA: 3'- -CGCuUGGGcuaCCGgaUGCGGCGCCg -5' |
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28144 | 3' | -59.1 | NC_005887.1 | + | 14895 | 0.67 | 0.402929 |
Target: 5'- cGCGAACgUGcccGCCaucaGCGUCGCGGCc -3' miRNA: 3'- -CGCUUGgGCuacCGGa---UGCGGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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