miRNA display CGI


Results 41 - 60 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 13286 0.67 0.50009
Target:  5'- -aGGCGCaGGCGCUGAaccagaUCGGCcagGCGuUCg -3'
miRNA:   3'- agUCGUG-CUGCGACU------AGCCG---CGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 13619 0.67 0.50009
Target:  5'- gCAGCGCGGCGCgcggCGGcCGCacUCa -3'
miRNA:   3'- aGUCGUGCUGCGacuaGCC-GCGcuAG- -5'
28144 5' -56.1 NC_005887.1 + 9767 0.67 0.50009
Target:  5'- gCuGCACGAuCGCUGAgucaUCGGUcuGCuGGUCg -3'
miRNA:   3'- aGuCGUGCU-GCGACU----AGCCG--CG-CUAG- -5'
28144 5' -56.1 NC_005887.1 + 4785 0.67 0.50009
Target:  5'- gCGGCgguuccagaaACGGaggaaucgGCUGAUCGGCGCGcccAUCa -3'
miRNA:   3'- aGUCG----------UGCUg-------CGACUAGCCGCGC---UAG- -5'
28144 5' -56.1 NC_005887.1 + 1230 0.67 0.50009
Target:  5'- -uGGCG-GGCGCUGcgCGGCGCu--- -3'
miRNA:   3'- agUCGUgCUGCGACuaGCCGCGcuag -5'
28144 5' -56.1 NC_005887.1 + 23650 0.67 0.496937
Target:  5'- gCuGUACG-CGCUGAUugucggagauaaucCGGCGCGcgCg -3'
miRNA:   3'- aGuCGUGCuGCGACUA--------------GCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 2419 0.68 0.489617
Target:  5'- gUCGGCcuGCGAgCGCUGGUCGccCGCcgGAUCg -3'
miRNA:   3'- -AGUCG--UGCU-GCGACUAGCc-GCG--CUAG- -5'
28144 5' -56.1 NC_005887.1 + 5411 0.68 0.479248
Target:  5'- cCGGCggGCGGCGCcgcagcGAcCGGCGCGAc- -3'
miRNA:   3'- aGUCG--UGCUGCGa-----CUaGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 5498 0.68 0.468987
Target:  5'- cCAGCG-GGCGCgUGGUCGcGC-CGGUCg -3'
miRNA:   3'- aGUCGUgCUGCG-ACUAGC-CGcGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 13379 0.68 0.468987
Target:  5'- -uGGCGCucGCGCUGAaggcCGGCGCGGc- -3'
miRNA:   3'- agUCGUGc-UGCGACUa---GCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 23235 0.68 0.468987
Target:  5'- aCGGCACGcgaGCgGCggcGGUCGGCGCGc-- -3'
miRNA:   3'- aGUCGUGC---UG-CGa--CUAGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 34971 0.68 0.462885
Target:  5'- aCAGCGCGACGUUccucgucgaGAagGGCagcgcgaacgacaagGCGAUCg -3'
miRNA:   3'- aGUCGUGCUGCGA---------CUagCCG---------------CGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 38231 0.68 0.45884
Target:  5'- --uGCGCGugGCcgggaUGGUCGaGCGCucGAUCg -3'
miRNA:   3'- aguCGUGCugCG-----ACUAGC-CGCG--CUAG- -5'
28144 5' -56.1 NC_005887.1 + 282 0.68 0.45884
Target:  5'- -uGGCGCGGgaaCUGcgUGGCGUGAUCa -3'
miRNA:   3'- agUCGUGCUgc-GACuaGCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 601 0.68 0.448812
Target:  5'- cCGGCGCGGCGCgcggCGGCcgacGCGuUCa -3'
miRNA:   3'- aGUCGUGCUGCGacuaGCCG----CGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 28802 0.68 0.438905
Target:  5'- gCGGCuuucGCGAaauccaucaGCaGAUCGGCGCGGUa -3'
miRNA:   3'- aGUCG----UGCUg--------CGaCUAGCCGCGCUAg -5'
28144 5' -56.1 NC_005887.1 + 15443 0.68 0.438905
Target:  5'- aUCAGCGCGGCGUcGAccugcUCGG-GCG-UCa -3'
miRNA:   3'- -AGUCGUGCUGCGaCU-----AGCCgCGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 17064 0.68 0.438905
Target:  5'- cUCuGCGCGugGCgGAUCGGCaCGuagccguaGUCg -3'
miRNA:   3'- -AGuCGUGCugCGaCUAGCCGcGC--------UAG- -5'
28144 5' -56.1 NC_005887.1 + 7216 0.68 0.438905
Target:  5'- --uGCGCaGGCGCUG-UCGGCGuCGggCg -3'
miRNA:   3'- aguCGUG-CUGCGACuAGCCGC-GCuaG- -5'
28144 5' -56.1 NC_005887.1 + 18212 0.68 0.438905
Target:  5'- uUCGGCACGACGUcGG-CGGCcCGcgCu -3'
miRNA:   3'- -AGUCGUGCUGCGaCUaGCCGcGCuaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.