miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 28358 0.67 0.542898
Target:  5'- gUCGcCACGACGCUGcgcgcgcUCGGCGUGc-- -3'
miRNA:   3'- -AGUcGUGCUGCGACu------AGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 13608 0.67 0.542898
Target:  5'- gCAGCGCauCGCcGAUCGcauuCGCGAUCg -3'
miRNA:   3'- aGUCGUGcuGCGaCUAGCc---GCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 9900 0.67 0.542898
Target:  5'- uUCAGguUGgccGCGCUGAcCGGCuGCGAc- -3'
miRNA:   3'- -AGUCguGC---UGCGACUaGCCG-CGCUag -5'
28144 5' -56.1 NC_005887.1 + 41511 0.67 0.542898
Target:  5'- aCGGCAaguCGACGgUGcUCGGCaaGAUCc -3'
miRNA:   3'- aGUCGU---GCUGCgACuAGCCGcgCUAG- -5'
28144 5' -56.1 NC_005887.1 + 30938 0.67 0.542898
Target:  5'- cCAGCGCGcucgGCGgUGAugUCGGCGCc--- -3'
miRNA:   3'- aGUCGUGC----UGCgACU--AGCCGCGcuag -5'
28144 5' -56.1 NC_005887.1 + 8614 0.67 0.536393
Target:  5'- uUCGGCAUG-CGCccuccuaacugcggaUGAUCGGCGUu-UCg -3'
miRNA:   3'- -AGUCGUGCuGCG---------------ACUAGCCGCGcuAG- -5'
28144 5' -56.1 NC_005887.1 + 17144 0.67 0.532071
Target:  5'- --cGCAaGGUGCUGGUCGGCGaaGAUCg -3'
miRNA:   3'- aguCGUgCUGCGACUAGCCGCg-CUAG- -5'
28144 5' -56.1 NC_005887.1 + 14534 0.67 0.532071
Target:  5'- gCGGCcgucgGCGGCGCgucGAUCGGCaugucGCGcgCg -3'
miRNA:   3'- aGUCG-----UGCUGCGa--CUAGCCG-----CGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 31715 0.67 0.532071
Target:  5'- -uGGCGCGAUGCUGAcUGGCuGCu--- -3'
miRNA:   3'- agUCGUGCUGCGACUaGCCG-CGcuag -5'
28144 5' -56.1 NC_005887.1 + 33643 0.67 0.521323
Target:  5'- gUAGCGCG-CGCUGcgcUCGGCGaggguuucauUGAUCu -3'
miRNA:   3'- aGUCGUGCuGCGACu--AGCCGC----------GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 28568 0.67 0.521323
Target:  5'- -aGGCGuCGccgccCGCUGcgCGGaCGCGGUCg -3'
miRNA:   3'- agUCGU-GCu----GCGACuaGCC-GCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 11778 0.67 0.521323
Target:  5'- cUCGGCgGCGuccuCGCUGcUCGGCgGCG-UCg -3'
miRNA:   3'- -AGUCG-UGCu---GCGACuAGCCG-CGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 21438 0.67 0.521323
Target:  5'- uUCGGCgACGACGCUcucagcGUCGaGCaCGGUCa -3'
miRNA:   3'- -AGUCG-UGCUGCGAc-----UAGC-CGcGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 15644 0.67 0.51066
Target:  5'- cUCAGCuuCGGCGaucagcgaAUCGaGCGCGGUCg -3'
miRNA:   3'- -AGUCGu-GCUGCgac-----UAGC-CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 32425 0.67 0.51066
Target:  5'- cCGGCgGCGAUG-UGGcCGGCGgCGAUCa -3'
miRNA:   3'- aGUCG-UGCUGCgACUaGCCGC-GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 37444 0.67 0.51066
Target:  5'- -gAGCGCGGCGCUugcCuGCGCGGUUu -3'
miRNA:   3'- agUCGUGCUGCGAcuaGcCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 11543 0.67 0.51066
Target:  5'- aUCAGCAgcuCGGCGCgcagCGcGCgGCGGUCg -3'
miRNA:   3'- -AGUCGU---GCUGCGacuaGC-CG-CGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 14191 0.67 0.51066
Target:  5'- --uGCACG-CGCUG-UCGGgCGCGGccUCg -3'
miRNA:   3'- aguCGUGCuGCGACuAGCC-GCGCU--AG- -5'
28144 5' -56.1 NC_005887.1 + 3770 0.67 0.51066
Target:  5'- gUCGGCGCG-CgGCUcGA-CGGCGUGGUa -3'
miRNA:   3'- -AGUCGUGCuG-CGA-CUaGCCGCGCUAg -5'
28144 5' -56.1 NC_005887.1 + 33608 0.67 0.50009
Target:  5'- uUCuGCGCGA-GCg---CGGCGUGGUCu -3'
miRNA:   3'- -AGuCGUGCUgCGacuaGCCGCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.