miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 7126 0.69 0.429125
Target:  5'- gCGGgGCGGCGCUG--CGGCGCcguUCa -3'
miRNA:   3'- aGUCgUGCUGCGACuaGCCGCGcu-AG- -5'
28144 5' -56.1 NC_005887.1 + 7216 0.68 0.438905
Target:  5'- --uGCGCaGGCGCUG-UCGGCGuCGggCg -3'
miRNA:   3'- aguCGUG-CUGCGACuAGCCGC-GCuaG- -5'
28144 5' -56.1 NC_005887.1 + 7446 0.69 0.390414
Target:  5'- gUCGGCgagcugaacGCGGCGUUGucGUCGgucugcaGCGCGAUCg -3'
miRNA:   3'- -AGUCG---------UGCUGCGAC--UAGC-------CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 8161 0.67 0.553797
Target:  5'- -gAGCGCGGCgaGCUGcgCGcGCGCuuUCg -3'
miRNA:   3'- agUCGUGCUG--CGACuaGC-CGCGcuAG- -5'
28144 5' -56.1 NC_005887.1 + 8375 0.69 0.429125
Target:  5'- aCAGCGCGuccauCGCguucgGAUCGGUGaCGcgCu -3'
miRNA:   3'- aGUCGUGCu----GCGa----CUAGCCGC-GCuaG- -5'
28144 5' -56.1 NC_005887.1 + 8614 0.67 0.536393
Target:  5'- uUCGGCAUG-CGCccuccuaacugcggaUGAUCGGCGUu-UCg -3'
miRNA:   3'- -AGUCGUGCuGCG---------------ACUAGCCGCGcuAG- -5'
28144 5' -56.1 NC_005887.1 + 9368 0.69 0.409957
Target:  5'- aUCGGCGacaGACGaauacgggucGAUCGGCGCGGa- -3'
miRNA:   3'- -AGUCGUg--CUGCga--------CUAGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 9767 0.67 0.50009
Target:  5'- gCuGCACGAuCGCUGAgucaUCGGUcuGCuGGUCg -3'
miRNA:   3'- aGuCGUGCU-GCGACU----AGCCG--CG-CUAG- -5'
28144 5' -56.1 NC_005887.1 + 9896 0.69 0.400575
Target:  5'- cCAGC-CGGUGCaGGUCGGCGgcaCGAUCa -3'
miRNA:   3'- aGUCGuGCUGCGaCUAGCCGC---GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 9900 0.67 0.542898
Target:  5'- uUCAGguUGgccGCGCUGAcCGGCuGCGAc- -3'
miRNA:   3'- -AGUCguGC---UGCGACUaGCCG-CGCUag -5'
28144 5' -56.1 NC_005887.1 + 10083 0.69 0.400575
Target:  5'- cCAGCGCGgccGCGCgUGAUgUGGUcgGCGAUCu -3'
miRNA:   3'- aGUCGUGC---UGCG-ACUA-GCCG--CGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 10174 0.71 0.322551
Target:  5'- gCAGC-CGAUcaGCUGGccgUCGGCGCGGg- -3'
miRNA:   3'- aGUCGuGCUG--CGACU---AGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 10979 0.73 0.237017
Target:  5'- aUCGGCugGACGCUcGUCgaggauGGCGUGGUg -3'
miRNA:   3'- -AGUCGugCUGCGAcUAG------CCGCGCUAg -5'
28144 5' -56.1 NC_005887.1 + 11543 0.67 0.51066
Target:  5'- aUCAGCAgcuCGGCGCgcagCGcGCgGCGGUCg -3'
miRNA:   3'- -AGUCGU---GCUGCGacuaGC-CG-CGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 11778 0.67 0.521323
Target:  5'- cUCGGCgGCGuccuCGCUGcUCGGCgGCG-UCg -3'
miRNA:   3'- -AGUCG-UGCu---GCGACuAGCCG-CGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 12263 0.74 0.191186
Target:  5'- cCGGCGCGGCGCUG-UCcuuCGCGGUCu -3'
miRNA:   3'- aGUCGUGCUGCGACuAGcc-GCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 12483 0.7 0.382226
Target:  5'- cUCAGCuCG-CGCUGAUCgauucagcGGCGCugGAUCc -3'
miRNA:   3'- -AGUCGuGCuGCGACUAG--------CCGCG--CUAG- -5'
28144 5' -56.1 NC_005887.1 + 12539 0.72 0.284358
Target:  5'- aUCAGCGCGA-GCUGAgaaGCGCGcGUCg -3'
miRNA:   3'- -AGUCGUGCUgCGACUagcCGCGC-UAG- -5'
28144 5' -56.1 NC_005887.1 + 12665 0.66 0.575778
Target:  5'- gUCAGCACGccgagcguCGCggccgGGUCGGCG-GAc- -3'
miRNA:   3'- -AGUCGUGCu-------GCGa----CUAGCCGCgCUag -5'
28144 5' -56.1 NC_005887.1 + 12705 0.71 0.328194
Target:  5'- gUCAcGCGCGcACGCUGGUCGcgcagcagcagaauGCGCucGAUCg -3'
miRNA:   3'- -AGU-CGUGC-UGCGACUAGC--------------CGCG--CUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.