miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 16578 0.73 0.218835
Target:  5'- cCGGCgGCGACGC-GAUCGGCcuGCGAcaUCg -3'
miRNA:   3'- aGUCG-UGCUGCGaCUAGCCG--CGCU--AG- -5'
28144 5' -56.1 NC_005887.1 + 15381 0.73 0.218835
Target:  5'- gCAGguCGacgccGCGCUGAUCGcGCGCGggCa -3'
miRNA:   3'- aGUCguGC-----UGCGACUAGC-CGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 37260 0.73 0.22476
Target:  5'- gCGGCACGuCGCUGGauuucucgggagUCGGUGCaGUCg -3'
miRNA:   3'- aGUCGUGCuGCGACU------------AGCCGCGcUAG- -5'
28144 5' -56.1 NC_005887.1 + 10979 0.73 0.237017
Target:  5'- aUCGGCugGACGCUcGUCgaggauGGCGUGGUg -3'
miRNA:   3'- -AGUCGugCUGCGAcUAG------CCGCGCUAg -5'
28144 5' -56.1 NC_005887.1 + 15742 0.73 0.243353
Target:  5'- --cGCGCGGCGgUGAgcuggucgagcUCGGCGCGcAUCu -3'
miRNA:   3'- aguCGUGCUGCgACU-----------AGCCGCGC-UAG- -5'
28144 5' -56.1 NC_005887.1 + 32780 0.73 0.243353
Target:  5'- cCGGCuCGuGCGCagGAUCGGCGCGcgCc -3'
miRNA:   3'- aGUCGuGC-UGCGa-CUAGCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 19187 0.72 0.256447
Target:  5'- gCGGCGCgGGCGUgGAgacaggCGGCGCGGUUa -3'
miRNA:   3'- aGUCGUG-CUGCGaCUa-----GCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 5133 0.72 0.263208
Target:  5'- cUCGGCAUGaccGCGCUGcccgacGUCGGCGCGc-- -3'
miRNA:   3'- -AGUCGUGC---UGCGAC------UAGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 33289 0.72 0.263208
Target:  5'- -gAGCACGGCGCgaccGAgugccagugCGGCGCGuUCa -3'
miRNA:   3'- agUCGUGCUGCGa---CUa--------GCCGCGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 29840 0.72 0.270112
Target:  5'- gCuGCGCGACGCggcGAUCcuCGCGAUCa -3'
miRNA:   3'- aGuCGUGCUGCGa--CUAGccGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 2646 0.72 0.277162
Target:  5'- gUCAGUACc-UGCUGGUgGGCGCGggCg -3'
miRNA:   3'- -AGUCGUGcuGCGACUAgCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 12539 0.72 0.284358
Target:  5'- aUCAGCGCGA-GCUGAgaaGCGCGcGUCg -3'
miRNA:   3'- -AGUCGUGCUgCGACUagcCGCGC-UAG- -5'
28144 5' -56.1 NC_005887.1 + 19362 0.72 0.284358
Target:  5'- gCAGCA-GACGCgug-CGGCGaCGAUCa -3'
miRNA:   3'- aGUCGUgCUGCGacuaGCCGC-GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 35656 0.72 0.284358
Target:  5'- -gAGCuCGACGCUG-UCGacauacagcagcGCGCGAUCg -3'
miRNA:   3'- agUCGuGCUGCGACuAGC------------CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 16732 0.72 0.287278
Target:  5'- cCGGCGCGAucaagucggauuacaUGCggcagacGAUgGGCGCGAUCg -3'
miRNA:   3'- aGUCGUGCU---------------GCGa------CUAgCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 12891 0.71 0.299191
Target:  5'- --uGCGCGA-GCUGAUCGGCacgGCGAg- -3'
miRNA:   3'- aguCGUGCUgCGACUAGCCG---CGCUag -5'
28144 5' -56.1 NC_005887.1 + 25191 0.71 0.314616
Target:  5'- gCAGCuGCGGCGCUGGaucUCGGCcggacaacCGGUCg -3'
miRNA:   3'- aGUCG-UGCUGCGACU---AGCCGc-------GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 22988 0.71 0.314616
Target:  5'- -uGGCGCGuugcCGCUGAUCGaCGcCGGUCg -3'
miRNA:   3'- agUCGUGCu---GCGACUAGCcGC-GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 16481 0.71 0.321751
Target:  5'- gCGGCAgGAUccggcggGCUGGUCGGCGauGUCg -3'
miRNA:   3'- aGUCGUgCUG-------CGACUAGCCGCgcUAG- -5'
28144 5' -56.1 NC_005887.1 + 10174 0.71 0.322551
Target:  5'- gCAGC-CGAUcaGCUGGccgUCGGCGCGGg- -3'
miRNA:   3'- aGUCGuGCUG--CGACU---AGCCGCGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.