miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 282 0.68 0.45884
Target:  5'- -uGGCGCGGgaaCUGcgUGGCGUGAUCa -3'
miRNA:   3'- agUCGUGCUgc-GACuaGCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 472 0.7 0.373264
Target:  5'- gCGGCGCGGCGCgucuucgCGGCGCu--- -3'
miRNA:   3'- aGUCGUGCUGCGacua---GCCGCGcuag -5'
28144 5' -56.1 NC_005887.1 + 601 0.68 0.448812
Target:  5'- cCGGCGCGGCGCgcggCGGCcgacGCGuUCa -3'
miRNA:   3'- aGUCGUGCUGCGacuaGCCG----CGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 1230 0.67 0.50009
Target:  5'- -uGGCG-GGCGCUGcgCGGCGCu--- -3'
miRNA:   3'- agUCGUgCUGCGACuaGCCGCGcuag -5'
28144 5' -56.1 NC_005887.1 + 1486 0.74 0.191186
Target:  5'- aCGGCguGCGGCGCUcGcgCGGCGCGGc- -3'
miRNA:   3'- aGUCG--UGCUGCGA-CuaGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 2419 0.68 0.489617
Target:  5'- gUCGGCcuGCGAgCGCUGGUCGccCGCcgGAUCg -3'
miRNA:   3'- -AGUCG--UGCU-GCGACUAGCc-GCG--CUAG- -5'
28144 5' -56.1 NC_005887.1 + 2646 0.72 0.277162
Target:  5'- gUCAGUACc-UGCUGGUgGGCGCGggCg -3'
miRNA:   3'- -AGUCGUGcuGCGACUAgCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 3310 0.71 0.330635
Target:  5'- --uGCGCaGCGC-GAgCGGCGCGGUCg -3'
miRNA:   3'- aguCGUGcUGCGaCUaGCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 3371 0.69 0.409957
Target:  5'- uUCAGC-CGAUGCcaGAgcugcgucgcCGGCGUGAUCa -3'
miRNA:   3'- -AGUCGuGCUGCGa-CUa---------GCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 3602 0.69 0.39133
Target:  5'- cUCGGCGaaccagaGGCGCUGcAUCGGCacguuGCGGUa -3'
miRNA:   3'- -AGUCGUg------CUGCGAC-UAGCCG-----CGCUAg -5'
28144 5' -56.1 NC_005887.1 + 3770 0.67 0.51066
Target:  5'- gUCGGCGCG-CgGCUcGA-CGGCGUGGUa -3'
miRNA:   3'- -AGUCGUGCuG-CGA-CUaGCCGCGCUAg -5'
28144 5' -56.1 NC_005887.1 + 4281 0.74 0.211333
Target:  5'- gCAGCACGccuuucuccugcgcGCGCUGcagcacuUCGGuCGCGGUCa -3'
miRNA:   3'- aGUCGUGC--------------UGCGACu------AGCC-GCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 4358 0.69 0.419475
Target:  5'- cUCGGCGagGAUGUcGAccUCGcGCGCGAUCa -3'
miRNA:   3'- -AGUCGUg-CUGCGaCU--AGC-CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 4620 0.74 0.191186
Target:  5'- cUCGcCGCGGCGCcGGUggccgcCGGCGCGAUCa -3'
miRNA:   3'- -AGUcGUGCUGCGaCUA------GCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 4785 0.67 0.50009
Target:  5'- gCGGCgguuccagaaACGGaggaaucgGCUGAUCGGCGCGcccAUCa -3'
miRNA:   3'- aGUCG----------UGCUg-------CGACUAGCCGCGC---UAG- -5'
28144 5' -56.1 NC_005887.1 + 5133 0.72 0.263208
Target:  5'- cUCGGCAUGaccGCGCUGcccgacGUCGGCGCGc-- -3'
miRNA:   3'- -AGUCGUGC---UGCGAC------UAGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 5221 0.7 0.355773
Target:  5'- aUCAGCaucaGCGGCGCgccGAcgUCGggcaGCGCGGUCa -3'
miRNA:   3'- -AGUCG----UGCUGCGa--CU--AGC----CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 5411 0.68 0.479248
Target:  5'- cCGGCggGCGGCGCcgcagcGAcCGGCGCGAc- -3'
miRNA:   3'- aGUCG--UGCUGCGa-----CUaGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 5498 0.68 0.468987
Target:  5'- cCAGCG-GGCGCgUGGUCGcGC-CGGUCg -3'
miRNA:   3'- aGUCGUgCUGCG-ACUAGC-CGcGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 5984 0.75 0.186038
Target:  5'- gCAGCACGAucaagauguuuuCGCaGAUCGGUGCG-UCg -3'
miRNA:   3'- aGUCGUGCU------------GCGaCUAGCCGCGCuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.