miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 22988 0.71 0.314616
Target:  5'- -uGGCGCGuugcCGCUGAUCGaCGcCGGUCg -3'
miRNA:   3'- agUCGUGCu---GCGACUAGCcGC-GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 32780 0.73 0.243353
Target:  5'- cCGGCuCGuGCGCagGAUCGGCGCGcgCc -3'
miRNA:   3'- aGUCGuGC-UGCGa-CUAGCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 19187 0.72 0.256447
Target:  5'- gCGGCGCgGGCGUgGAgacaggCGGCGCGGUUa -3'
miRNA:   3'- aGUCGUG-CUGCGaCUa-----GCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 5133 0.72 0.263208
Target:  5'- cUCGGCAUGaccGCGCUGcccgacGUCGGCGCGc-- -3'
miRNA:   3'- -AGUCGUGC---UGCGAC------UAGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 2646 0.72 0.277162
Target:  5'- gUCAGUACc-UGCUGGUgGGCGCGggCg -3'
miRNA:   3'- -AGUCGUGcuGCGACUAgCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 19362 0.72 0.284358
Target:  5'- gCAGCA-GACGCgug-CGGCGaCGAUCa -3'
miRNA:   3'- aGUCGUgCUGCGacuaGCCGC-GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 35656 0.72 0.284358
Target:  5'- -gAGCuCGACGCUG-UCGacauacagcagcGCGCGAUCg -3'
miRNA:   3'- agUCGuGCUGCGACuAGC------------CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 16732 0.72 0.287278
Target:  5'- cCGGCGCGAucaagucggauuacaUGCggcagacGAUgGGCGCGAUCg -3'
miRNA:   3'- aGUCGUGCU---------------GCGa------CUAgCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 12891 0.71 0.299191
Target:  5'- --uGCGCGA-GCUGAUCGGCacgGCGAg- -3'
miRNA:   3'- aguCGUGCUgCGACUAGCCG---CGCUag -5'
28144 5' -56.1 NC_005887.1 + 10979 0.73 0.237017
Target:  5'- aUCGGCugGACGCUcGUCgaggauGGCGUGGUg -3'
miRNA:   3'- -AGUCGugCUGCGAcUAG------CCGCGCUAg -5'
28144 5' -56.1 NC_005887.1 + 37260 0.73 0.22476
Target:  5'- gCGGCACGuCGCUGGauuucucgggagUCGGUGCaGUCg -3'
miRNA:   3'- aGUCGUGCuGCGACU------------AGCCGCGcUAG- -5'
28144 5' -56.1 NC_005887.1 + 15381 0.73 0.218835
Target:  5'- gCAGguCGacgccGCGCUGAUCGcGCGCGggCa -3'
miRNA:   3'- aGUCguGC-----UGCGACUAGC-CGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 17538 0.79 0.086694
Target:  5'- gCGGCAUGACGUcGGUCGGCGCGu-- -3'
miRNA:   3'- aGUCGUGCUGCGaCUAGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 14223 0.79 0.097326
Target:  5'- gCGGCGCcGCGCUGuUCGGCGCGGc- -3'
miRNA:   3'- aGUCGUGcUGCGACuAGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 21066 0.77 0.137051
Target:  5'- gUCGGCGCcggugugggguGGCGUUGGcuugaacgguaUCGGCGCGGUCg -3'
miRNA:   3'- -AGUCGUG-----------CUGCGACU-----------AGCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 37394 0.75 0.16665
Target:  5'- uUCAGCugG-CGCUGcgCGGuCGCGAc- -3'
miRNA:   3'- -AGUCGugCuGCGACuaGCC-GCGCUag -5'
28144 5' -56.1 NC_005887.1 + 5984 0.75 0.186038
Target:  5'- gCAGCACGAucaagauguuuuCGCaGAUCGGUGCG-UCg -3'
miRNA:   3'- aGUCGUGCU------------GCGaCUAGCCGCGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 1486 0.74 0.191186
Target:  5'- aCGGCguGCGGCGCUcGcgCGGCGCGGc- -3'
miRNA:   3'- aGUCG--UGCUGCGA-CuaGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 4620 0.74 0.191186
Target:  5'- cUCGcCGCGGCGCcGGUggccgcCGGCGCGAUCa -3'
miRNA:   3'- -AGUcGUGCUGCGaCUA------GCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 15830 0.74 0.196459
Target:  5'- -aGGUGCaGCGCuUGcgCGGCGCGAUCg -3'
miRNA:   3'- agUCGUGcUGCG-ACuaGCCGCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.