miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 40832 0.66 0.609086
Target:  5'- cCGGCucgGCGGCGCg---CGGCGCGc-- -3'
miRNA:   3'- aGUCG---UGCUGCGacuaGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 4785 0.67 0.50009
Target:  5'- gCGGCgguuccagaaACGGaggaaucgGCUGAUCGGCGCGcccAUCa -3'
miRNA:   3'- aGUCG----------UGCUg-------CGACUAGCCGCGC---UAG- -5'
28144 5' -56.1 NC_005887.1 + 5498 0.68 0.468987
Target:  5'- cCAGCG-GGCGCgUGGUCGcGC-CGGUCg -3'
miRNA:   3'- aGUCGUgCUGCG-ACUAGC-CGcGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 23364 0.79 0.089244
Target:  5'- gCAGUGCGGCGUUGuucuUCGGCGCGggCu -3'
miRNA:   3'- aGUCGUGCUGCGACu---AGCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 41917 0.66 0.575778
Target:  5'- aCGGCACGAgcaucaggcgcCGCcaGAUCG-CGUGGUCg -3'
miRNA:   3'- aGUCGUGCU-----------GCGa-CUAGCcGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 13343 0.66 0.56476
Target:  5'- uUCAGCGCcuGCGCcuuugugucGAUCGGCaacgaaucgacgGCGGUCa -3'
miRNA:   3'- -AGUCGUGc-UGCGa--------CUAGCCG------------CGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 8161 0.67 0.553797
Target:  5'- -gAGCGCGGCgaGCUGcgCGcGCGCuuUCg -3'
miRNA:   3'- agUCGUGCUG--CGACuaGC-CGCGcuAG- -5'
28144 5' -56.1 NC_005887.1 + 41867 0.67 0.553797
Target:  5'- aUCGGCuuGugGUUGGUUGGCaugaacGCGAc- -3'
miRNA:   3'- -AGUCGugCugCGACUAGCCG------CGCUag -5'
28144 5' -56.1 NC_005887.1 + 13608 0.67 0.542898
Target:  5'- gCAGCGCauCGCcGAUCGcauuCGCGAUCg -3'
miRNA:   3'- aGUCGUGcuGCGaCUAGCc---GCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 9767 0.67 0.50009
Target:  5'- gCuGCACGAuCGCUGAgucaUCGGUcuGCuGGUCg -3'
miRNA:   3'- aGuCGUGCU-GCGACU----AGCCG--CG-CUAG- -5'
28144 5' -56.1 NC_005887.1 + 31715 0.67 0.532071
Target:  5'- -uGGCGCGAUGCUGAcUGGCuGCu--- -3'
miRNA:   3'- agUCGUGCUGCGACUaGCCG-CGcuag -5'
28144 5' -56.1 NC_005887.1 + 9900 0.67 0.542898
Target:  5'- uUCAGguUGgccGCGCUGAcCGGCuGCGAc- -3'
miRNA:   3'- -AGUCguGC---UGCGACUaGCCG-CGCUag -5'
28144 5' -56.1 NC_005887.1 + 30031 0.66 0.59795
Target:  5'- aUCcGCGCGGCGgUGuucgCGGCGCucgacaccgucGAUCc -3'
miRNA:   3'- -AGuCGUGCUGCgACua--GCCGCG-----------CUAG- -5'
28144 5' -56.1 NC_005887.1 + 3770 0.67 0.51066
Target:  5'- gUCGGCGCG-CgGCUcGA-CGGCGUGGUa -3'
miRNA:   3'- -AGUCGUGCuG-CGA-CUaGCCGCGCUAg -5'
28144 5' -56.1 NC_005887.1 + 39586 0.66 0.59795
Target:  5'- -gAGC-CGGCGCcaguUGGUgCGGCGUGAa- -3'
miRNA:   3'- agUCGuGCUGCG----ACUA-GCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 28358 0.67 0.542898
Target:  5'- gUCGcCACGACGCUGcgcgcgcUCGGCGUGc-- -3'
miRNA:   3'- -AGUcGUGCUGCGACu------AGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 15644 0.67 0.51066
Target:  5'- cUCAGCuuCGGCGaucagcgaAUCGaGCGCGGUCg -3'
miRNA:   3'- -AGUCGu-GCUGCgac-----UAGC-CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 2419 0.68 0.489617
Target:  5'- gUCGGCcuGCGAgCGCUGGUCGccCGCcgGAUCg -3'
miRNA:   3'- -AGUCG--UGCU-GCGACUAGCc-GCG--CUAG- -5'
28144 5' -56.1 NC_005887.1 + 12665 0.66 0.575778
Target:  5'- gUCAGCACGccgagcguCGCggccgGGUCGGCG-GAc- -3'
miRNA:   3'- -AGUCGUGCu-------GCGa----CUAGCCGCgCUag -5'
28144 5' -56.1 NC_005887.1 + 33803 0.66 0.56476
Target:  5'- -aGGCcgGCG-CGCUGAuccUCGcCGCGAUCg -3'
miRNA:   3'- agUCG--UGCuGCGACU---AGCcGCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.