miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 41917 0.66 0.575778
Target:  5'- aCGGCACGAgcaucaggcgcCGCcaGAUCG-CGUGGUCg -3'
miRNA:   3'- aGUCGUGCU-----------GCGa-CUAGCcGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 41867 0.67 0.553797
Target:  5'- aUCGGCuuGugGUUGGUUGGCaugaacGCGAc- -3'
miRNA:   3'- -AGUCGugCugCGACUAGCCG------CGCUag -5'
28144 5' -56.1 NC_005887.1 + 41511 0.67 0.542898
Target:  5'- aCGGCAaguCGACGgUGcUCGGCaaGAUCc -3'
miRNA:   3'- aGUCGU---GCUGCgACuAGCCGcgCUAG- -5'
28144 5' -56.1 NC_005887.1 + 40832 0.66 0.609086
Target:  5'- cCGGCucgGCGGCGCg---CGGCGCGc-- -3'
miRNA:   3'- aGUCG---UGCUGCGacuaGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 40721 0.74 0.201858
Target:  5'- -uGGUGCGGcCGgUGAUCGGCGCGcgCu -3'
miRNA:   3'- agUCGUGCU-GCgACUAGCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 40361 0.66 0.609086
Target:  5'- -gAGCGCGGCcgugccGCUcGUCGcGCGCGAg- -3'
miRNA:   3'- agUCGUGCUG------CGAcUAGC-CGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 39869 0.76 0.157652
Target:  5'- cCAGCagugcgaagugACGACGCgcgcaacGAUCGGCGCGAg- -3'
miRNA:   3'- aGUCG-----------UGCUGCGa------CUAGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 39781 0.66 0.575778
Target:  5'- gCGGCGCucGCGCcGAUCGuuGCGCGcGUCg -3'
miRNA:   3'- aGUCGUGc-UGCGaCUAGC--CGCGC-UAG- -5'
28144 5' -56.1 NC_005887.1 + 39586 0.66 0.59795
Target:  5'- -gAGC-CGGCGCcaguUGGUgCGGCGUGAa- -3'
miRNA:   3'- agUCGuGCUGCG----ACUA-GCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 38231 0.68 0.45884
Target:  5'- --uGCGCGugGCcgggaUGGUCGaGCGCucGAUCg -3'
miRNA:   3'- aguCGUGCugCG-----ACUAGC-CGCG--CUAG- -5'
28144 5' -56.1 NC_005887.1 + 37444 0.67 0.51066
Target:  5'- -gAGCGCGGCGCUugcCuGCGCGGUUu -3'
miRNA:   3'- agUCGUGCUGCGAcuaGcCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 37394 0.75 0.16665
Target:  5'- uUCAGCugG-CGCUGcgCGGuCGCGAc- -3'
miRNA:   3'- -AGUCGugCuGCGACuaGCC-GCGCUag -5'
28144 5' -56.1 NC_005887.1 + 37260 0.73 0.22476
Target:  5'- gCGGCACGuCGCUGGauuucucgggagUCGGUGCaGUCg -3'
miRNA:   3'- aGUCGUGCuGCGACU------------AGCCGCGcUAG- -5'
28144 5' -56.1 NC_005887.1 + 35656 0.72 0.284358
Target:  5'- -gAGCuCGACGCUG-UCGacauacagcagcGCGCGAUCg -3'
miRNA:   3'- agUCGuGCUGCGACuAGC------------CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 34971 0.68 0.462885
Target:  5'- aCAGCGCGACGUUccucgucgaGAagGGCagcgcgaacgacaagGCGAUCg -3'
miRNA:   3'- aGUCGUGCUGCGA---------CUagCCG---------------CGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 33811 0.66 0.56476
Target:  5'- aCGGcCACcACGCgggugucaGGUCGGCGCGGcgaUCg -3'
miRNA:   3'- aGUC-GUGcUGCGa-------CUAGCCGCGCU---AG- -5'
28144 5' -56.1 NC_005887.1 + 33803 0.66 0.56476
Target:  5'- -aGGCcgGCG-CGCUGAuccUCGcCGCGAUCg -3'
miRNA:   3'- agUCG--UGCuGCGACU---AGCcGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 33712 0.66 0.586845
Target:  5'- -uGGCGCGGCGgUcGAUCuGCuCGAUCg -3'
miRNA:   3'- agUCGUGCUGCgA-CUAGcCGcGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 33643 0.67 0.521323
Target:  5'- gUAGCGCG-CGCUGcgcUCGGCGaggguuucauUGAUCu -3'
miRNA:   3'- aGUCGUGCuGCGACu--AGCCGC----------GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 33608 0.67 0.50009
Target:  5'- uUCuGCGCGA-GCg---CGGCGUGGUCu -3'
miRNA:   3'- -AGuCGUGCUgCGacuaGCCGCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.