miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 3' -50.5 NC_005887.1 + 18864 1.1 0.002355
Target:  5'- uCGUUCGCGAACGCAGUACCACAACGAu -3'
miRNA:   3'- -GCAAGCGCUUGCGUCAUGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 21431 0.81 0.190527
Target:  5'- gCGUUCGUGAACGCAGUAgUCGCAAguUGAg -3'
miRNA:   3'- -GCAAGCGCUUGCGUCAU-GGUGUU--GCU- -5'
28145 3' -50.5 NC_005887.1 + 14846 0.76 0.360573
Target:  5'- aCGUUCGCGGGCGUGcacACCGCAGCa- -3'
miRNA:   3'- -GCAAGCGCUUGCGUca-UGGUGUUGcu -5'
28145 3' -50.5 NC_005887.1 + 12928 0.76 0.369578
Target:  5'- -uUUCGCGAGCGCGucccUGCCGCAGCa- -3'
miRNA:   3'- gcAAGCGCUUGCGUc---AUGGUGUUGcu -5'
28145 3' -50.5 NC_005887.1 + 37569 0.74 0.457226
Target:  5'- aGUUgGCGGcuCGCGGaGCCGCGGCGGa -3'
miRNA:   3'- gCAAgCGCUu-GCGUCaUGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 7526 0.74 0.4996
Target:  5'- uCGUUCGCGAACGgCAugccgAUCACGACGc -3'
miRNA:   3'- -GCAAGCGCUUGC-GUca---UGGUGUUGCu -5'
28145 3' -50.5 NC_005887.1 + 17352 0.73 0.510469
Target:  5'- gCGUUUGCGcGCGCGGcGCCGCccGACGu -3'
miRNA:   3'- -GCAAGCGCuUGCGUCaUGGUG--UUGCu -5'
28145 3' -50.5 NC_005887.1 + 10706 0.73 0.53249
Target:  5'- uCGaaCGCGAuggaccGCGCGGUGCCGCuguuCGAu -3'
miRNA:   3'- -GCaaGCGCU------UGCGUCAUGGUGuu--GCU- -5'
28145 3' -50.5 NC_005887.1 + 32555 0.73 0.543629
Target:  5'- -uUUUGUGAGCGguGccUACUACAACGAg -3'
miRNA:   3'- gcAAGCGCUUGCguC--AUGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 8949 0.72 0.588852
Target:  5'- gGUcCGCGAGCGC-GUACgGCGucGCGAu -3'
miRNA:   3'- gCAaGCGCUUGCGuCAUGgUGU--UGCU- -5'
28145 3' -50.5 NC_005887.1 + 27307 0.72 0.611737
Target:  5'- cCGgcgCGCG-AUGCAGUugCGCcGCGAu -3'
miRNA:   3'- -GCaa-GCGCuUGCGUCAugGUGuUGCU- -5'
28145 3' -50.5 NC_005887.1 + 8926 0.71 0.623214
Target:  5'- aCGUUCGCGAuccgcgcgACGCAGagcGCCGacACGAu -3'
miRNA:   3'- -GCAAGCGCU--------UGCGUCa--UGGUguUGCU- -5'
28145 3' -50.5 NC_005887.1 + 17181 0.71 0.6347
Target:  5'- aGcgCGCGAACGCG--GCCGCAcGCGGc -3'
miRNA:   3'- gCaaGCGCUUGCGUcaUGGUGU-UGCU- -5'
28145 3' -50.5 NC_005887.1 + 33408 0.71 0.6347
Target:  5'- --aUCGCGGuGCGUAGaUACCGCGAcCGAg -3'
miRNA:   3'- gcaAGCGCU-UGCGUC-AUGGUGUU-GCU- -5'
28145 3' -50.5 NC_005887.1 + 11789 0.71 0.6347
Target:  5'- -aUUCGUGcGCGCcGUGCgCGCGGCGAa -3'
miRNA:   3'- gcAAGCGCuUGCGuCAUG-GUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 36490 0.7 0.6805
Target:  5'- gGUUCGCGAucaccggaaccGUGCGGUcgACCGCAGCa- -3'
miRNA:   3'- gCAAGCGCU-----------UGCGUCA--UGGUGUUGcu -5'
28145 3' -50.5 NC_005887.1 + 34708 0.7 0.714364
Target:  5'- cCGUcgUCGCGcuUGCGGUG-CGCGGCGAu -3'
miRNA:   3'- -GCA--AGCGCuuGCGUCAUgGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 3006 0.7 0.714364
Target:  5'- --gUCGCG---GCGGUGCCGCGGCGc -3'
miRNA:   3'- gcaAGCGCuugCGUCAUGGUGUUGCu -5'
28145 3' -50.5 NC_005887.1 + 23246 0.69 0.73652
Target:  5'- cCGUgaUCGCGAGCGCgacgagaaAGgcaaGCCACAcACGGg -3'
miRNA:   3'- -GCA--AGCGCUUGCG--------UCa---UGGUGU-UGCU- -5'
28145 3' -50.5 NC_005887.1 + 11317 0.69 0.73652
Target:  5'- uCGgcaGCGAGCGCcgcaACCGCGACGGc -3'
miRNA:   3'- -GCaagCGCUUGCGuca-UGGUGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.